RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 PRCDQ00LT1 54 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 LPCAT3Q6P1A2 487 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 H2BFWTQ7Z2G1 175 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 TBC1D26Q86UD7 250 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 OR4A16Q8NH70 328 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 C11orf45Q8TAV5 145 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 CD5P06127 495 aa18.25■□□□□ 0.51
PTPRF-216ENST00000617451 S100GP29377 79 aa18.25■□□□□ 0.51
PTPRF-216ENST00000617451 PAFAH1B2P68402 229 aa18.25■□□□□ 0.51
PTPRF-216ENST00000617451 TCF24Q7RTU0 167 aa18.25■□□□□ 0.51
PTPRF-216ENST00000617451 GNG7O60262 68 aa18.24■□□□□ 0.51
PTPRF-216ENST00000617451 HSPE1P61604 102 aaKnown RBP18.24■□□□□ 0.51
PTPRF-216ENST00000617451 RBMS2Q15434 407 aaKnown RBP18.24■□□□□ 0.51
PTPRF-216ENST00000617451 TOMM20LQ6UXN7 152 aa18.24■□□□□ 0.51
PTPRF-216ENST00000617451 GINS3Q9BRX5 216 aa18.24■□□□□ 0.51
PTPRF-216ENST00000617451 VSIRQ9H7M9 311 aa18.24■□□□□ 0.51
PTPRF-216ENST00000617451 FBXL17Q9UF56 701 aa18.24■□□□□ 0.51
PTPRF-216ENST00000617451 IFNA4P05014 189 aa18.23■□□□□ 0.51
PTPRF-216ENST00000617451 TSPAN5P62079 268 aa18.23■□□□□ 0.51
PTPRF-216ENST00000617451 LILRB2Q8N423 598 aa18.23■□□□□ 0.51
PTPRF-216ENST00000617451 GPX8Q8TED1 209 aa18.23■□□□□ 0.51
PTPRF-216ENST00000617451 ST8SIA2Q92186 375 aa18.23■□□□□ 0.51
PTPRF-216ENST00000617451 PINX1Q96BK5 328 aaKnown RBP18.23■□□□□ 0.51
PTPRF-216ENST00000617451 CA1P00915 261 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-216ENST00000617451 APOHP02749 345 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-216ENST00000617451 ERHP84090 104 aaKnown RBP18.22■□□□□ 0.51
PTPRF-216ENST00000617451 KCTD21Q4G0X4 260 aa18.22■□□□□ 0.51
PTPRF-216ENST00000617451 MRGPRFQ96AM1 343 aa18.22■□□□□ 0.51
PTPRF-216ENST00000617451 MS4A6AQ9H2W1 248 aa18.22■□□□□ 0.51
PTPRF-216ENST00000617451 EIF4EP06730 217 aaKnown RBP18.21■□□□□ 0.51
PTPRF-216ENST00000617451 UCP3P55916 312 aa18.21■□□□□ 0.51
PTPRF-216ENST00000617451 ST8SIA3O43173 380 aa18.2■□□□□ 0.5
PTPRF-216ENST00000617451 DFFBO76075 338 aa18.2■□□□□ 0.5
PTPRF-216ENST00000617451 NPBWR1P48145 328 aa18.2■□□□□ 0.5
PTPRF-216ENST00000617451 TMEM187Q14656 261 aa18.2■□□□□ 0.5
PTPRF-216ENST00000617451 C2CD4CQ8TF44 421 aa18.2■□□□□ 0.5
PTPRF-216ENST00000617451 ZFAND3Q9H8U3 227 aa18.2■□□□□ 0.5
PTPRF-216ENST00000617451 TRAV2A0A0B4J234 112 aa18.19■□□□□ 0.5
PTPRF-216ENST00000617451 DNASE2O00115 360 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-216ENST00000617451 DEFB4AO15263 64 aa18.19■□□□□ 0.5
PTPRF-216ENST00000617451 DEFB131AP59861 70 aa18.19■□□□□ 0.5
PTPRF-216ENST00000617451 LEMD1Q68G75 181 aa18.19■□□□□ 0.5
PTPRF-216ENST00000617451 DUSP18Q8NEJ0 188 aa18.19■□□□□ 0.5
PTPRF-216ENST00000617451 SCPEP1Q9HB40 452 aa18.19■□□□□ 0.5
PTPRF-216ENST00000617451 PUS1Q9Y606 427 aaKnown RBP eCLIP18.19■□□□□ 0.5
PTPRF-216ENST00000617451 TCTAP57738 103 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 LSM3P62310 102 aaKnown RBP18.18■□□□□ 0.5
PTPRF-216ENST00000617451 PRR20EP86478 221 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 PRR20CP86479 221 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 PRR20DP86480 221 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 PRR20BP86481 221 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 PRR20AP86496 221 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 IZUMO4Q1ZYL8 232 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 SPINK9Q5DT21 86 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 ZNF600Q6ZNG1 722 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 FAM24BQ8N5W8 94 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 YIPF6Q96EC8 236 aa18.18■□□□□ 0.5
PTPRF-216ENST00000617451 IGHV3-66A0A0C4DH42 116 aa18.17■□□□□ 0.5
PTPRF-216ENST00000617451 RPL11P62913 178 aaKnown RBP18.17■□□□□ 0.5
PTPRF-216ENST00000617451 INS-IGF2F8WCM5 200 aa18.16■□□□□ 0.5
PTPRF-216ENST00000617451 TMEM50AO95807 157 aa18.16■□□□□ 0.5
PTPRF-216ENST00000617451 RCVRNP35243 200 aa18.16■□□□□ 0.5
PTPRF-216ENST00000617451 SNCAP37840 140 aa18.16■□□□□ 0.5
PTPRF-216ENST00000617451 PVRIGQ6DKI7 326 aa18.16■□□□□ 0.5
PTPRF-216ENST00000617451 A0A0B4J293 547 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 A0A1B0GU03 582 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 SMIM31A0A1B0GVY4 71 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 IGKV1-5P01602 117 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 APOA1P02647 267 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 SNX29P2Q8IUI4 249 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 Q8NAQ8 132 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 TMEM231Q9H6L2 316 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 COMMD3Q9UBI1 195 aa18.15■□□□□ 0.5
PTPRF-216ENST00000617451 P0C879 139 aa18.14■□□□□ 0.49
PTPRF-216ENST00000617451 RND3P61587 244 aa18.14■□□□□ 0.49
PTPRF-216ENST00000617451 STHQ8IWL8 128 aa18.14■□□□□ 0.49
PTPRF-216ENST00000617451 HRH4Q9H3N8 390 aa18.14■□□□□ 0.49
PTPRF-216ENST00000617451 GIG44P09565 113 aaPredicted RBP18.13■□□□□ 0.49
PTPRF-216ENST00000617451 NPPCP23582 126 aa18.13■□□□□ 0.49
PTPRF-216ENST00000617451 SLC35G3Q8N808 338 aa18.13■□□□□ 0.49
PTPRF-216ENST00000617451 RABAC1Q9UI14 185 aa18.13■□□□□ 0.49
PTPRF-216ENST00000617451 APLNQ9ULZ1 77 aa18.13■□□□□ 0.49
PTPRF-216ENST00000617451 M0QYG6 137 aa18.12■□□□□ 0.49
PTPRF-216ENST00000617451 ZNF486Q96H40 463 aaPredicted RBP18.12■□□□□ 0.49
PTPRF-216ENST00000617451 PCLOQ9Y6V0 5065 aa18.12■□□□□ 0.49
PTPRF-216ENST00000617451 AGRNO00468 2067 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 KIAA1109Q2LD37 5005 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 A0A1W2PS18 150 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 IGLL5B9A064 214 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 C11orf94C9JXX5 98 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 CORTO00230 105 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 IFNA17P01571 189 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 RNASE2P10153 161 aaKnown RBP18.11■□□□□ 0.49
PTPRF-216ENST00000617451 PI3P19957 117 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 SUB1P53999 127 aaKnown RBP eCLIP18.11■□□□□ 0.49
PTPRF-216ENST00000617451 TRPT1Q86TN4 253 aaKnown RBP18.11■□□□□ 0.49
PTPRF-216ENST00000617451 TP53RKQ96S44 253 aa18.11■□□□□ 0.49
PTPRF-216ENST00000617451 MRPL36Q9P0J6 103 aaKnown RBP18.11■□□□□ 0.49
PTPRF-216ENST00000617451 K7EQG2 157 aa18.1■□□□□ 0.49
PTPRF-216ENST00000617451 RBMY1A1P0DJD3 496 aaKnown RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms