RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 I3L2K1 104 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 CYB5BO43169 146 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 B3GALNT1O75752 331 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 CDS2O95674 445 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 OR5AC1P0C628 307 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 C8orf88P0DMB2 117 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 ADMP35318 185 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 TM4SF20Q53R12 229 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 PLET1Q6UQ28 207 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 Q6ZRM9 215 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF114Q8NC26 417 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 OR1L6Q8NGR2 347 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 LHFPL5Q8TAF8 219 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 GLYATL2Q8WU03 294 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 PRRT1Q99946 306 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 NEURL2Q9BR09 285 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 CHRDL1Q9BU40 450 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF436Q9C0F3 470 aaPredicted RBP7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM222Q9H0R3 208 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 C21orf62Q9NYP8 219 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 TECRQ9NZ01 308 aaKnown RBP7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 V9GYH0 126 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 IGHV3-35A0A0C4DH35 117 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 TEX13DA0A0J9YY54 714 aaPredicted RBP7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 OR2T8A6NH00 312 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 CRYM-AS1A6NIL9 109 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 ST8SIA3O43173 380 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 ATG12O94817 140 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 AKR1C2P52895 323 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF79Q15937 498 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 AARDQ4LEZ3 155 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 SPINK9Q5DT21 86 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 PVRIGQ6DKI7 326 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 SGPP2Q8IWX5 399 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 UXS1Q8NBZ7 420 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 DYNLRB2Q8TF09 96 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 TRIM63Q969Q1 353 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM230Q96A57 120 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 BSCL2Q96G97 398 aaPredicted RBP7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 WWC2-AS2Q96NR7 200 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 NAA60Q9H7X0 242 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 MLXQ9UH92 298 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 C14orf166Q9Y224 244 aaKnown RBP7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 SELENOKQ9Y6D0 94 aa7.74□□□□□ -1.17
CCDC88C-206ENST00000553437 CTSGP08311 255 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 FCGR2BP31994 310 aaPredicted RBP7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 ELLP55199 621 aaPredicted RBP7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 ERHP84090 104 aaKnown RBP7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 DHODHQ02127 395 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 KLF9Q13886 244 aaPredicted RBP7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 SPSB3Q6PJ21 355 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 GTSCR1Q86UQ5 136 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 SELENOHQ8IZQ5 122 aaKnown RBP7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM190Q8WZ59 177 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 MARC2Q969Z3 335 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 WDR89Q96FK6 387 aaPredicted RBP7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 KRTAP9-2Q9BYQ4 174 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 PLEKHA3Q9HB20 300 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 STAB2Q8WWQ8 2551 aa7.73□□□□□ -1.17
CCDC88C-206ENST00000553437 DYNC2H1Q8NCM8 4307 aaKnown RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 NDUFA4O00483 81 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 MT-CO2P00403 227 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 IFNA17P01571 189 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 IGHV3-48P01763 117 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 CD7P09564 240 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM187Q14656 261 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 PYDC2Q56P42 97 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF57Q68EA5 555 aaPredicted RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 LINC00322Q6ZN03 302 aaPredicted RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 FAM219AQ8IW50 185 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM61Q8N0U2 210 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 ZBTB8BQ8NAP8 495 aaPredicted RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 CHAC2Q8WUX2 184 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 RBPMSQ93062 196 aaKnown RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 GPR146Q96CH1 333 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 RRNAD1Q96FB5 475 aaKnown RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 MISP3Q96FF7 219 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 GALNT14Q96FL9 552 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 TM2D3Q9BRN9 247 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 MRPL27Q9P0M9 148 aaKnown RBP7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 SCP2D1Q9UJQ7 156 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 UFC1Q9Y3C8 167 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM56-RWDD3S4R434 201 aa7.72□□□□□ -1.17
CCDC88C-206ENST00000553437 KRTAP9-6A0A140TA67 174 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 K7EMT4 169 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 RNASE2P10153 161 aaKnown RBP7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 MFAP4P55083 255 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 CD81P60033 236 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 SUPT4H1P63272 117 aaKnown RBP7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 GUCA2BQ16661 112 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 BSXQ3C1V8 233 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 Q56UQ5 140 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 TMEM268Q5VZI3 342 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 BTNL8Q6UX41 500 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 SLC35G3Q8N808 338 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 UBAC2Q8NBM4 344 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 OR52E5Q8NH55 327 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 IL22RA2Q969J5 263 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 SCGB3A2Q96PL1 93 aa7.71□□□□□ -1.18
CCDC88C-206ENST00000553437 RCHY1Q96PM5 261 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms