RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CA1P00915 261 aaPredicted RBP14.31□□□□□ -0.12
SYNE3-202ENST00000553340 LHBP01229 141 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 GNG10P50151 68 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 MSMPQ1L6U9 139 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 RASL11AQ6T310 242 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 WNT10AQ9GZT5 417 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 LAMTOR2Q9Y2Q5 125 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 UBE2L3P68036 154 aaKnown RBP14.31□□□□□ -0.12
SYNE3-202ENST00000553340 SLAQ13239 276 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 MLANAQ16655 118 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 NHLRC2Q8NBF2 726 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 OR1L8Q8NGR8 309 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 C18orf32Q8TCD1 76 aa14.31□□□□□ -0.12
SYNE3-202ENST00000553340 C19orf67A6NJJ6 358 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 PRR33A8MZF0 331 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 SELENOVP59797 346 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 WIPF2Q8TF74 440 aaPredicted RBP14.3□□□□□ -0.12
SYNE3-202ENST00000553340 DNAJC4Q9NNZ3 241 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 ZDBF2Q9HCK1 2354 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 IGKV1-16P04430 117 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 RNASE2P10153 161 aaKnown RBP14.3□□□□□ -0.12
SYNE3-202ENST00000553340 CD69Q07108 199 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 BHLHA15Q7RTS1 189 aaPredicted RBP14.3□□□□□ -0.12
SYNE3-202ENST00000553340 STPG4Q8N801 248 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 OR5B3Q8NH48 314 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 FAM168AQ92567 244 aa14.3□□□□□ -0.12
SYNE3-202ENST00000553340 SSBP3Q9BWW4 388 aaPredicted RBP14.3□□□□□ -0.12
SYNE3-202ENST00000553340 ZNF71Q9NQZ8 489 aaPredicted RBP14.3□□□□□ -0.12
SYNE3-202ENST00000553340 SPRY3O43610 288 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 PMCHL1Q16048 86 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 FAM201AQ5SY85 155 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 STUMQ69YW2 141 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 DHRS13Q6UX07 377 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 SRRM4A7MD48 611 aaKnown RBP14.29□□□□□ -0.12
SYNE3-202ENST00000553340 FAM169BQ8N8A8 192 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 ITLN1Q8WWA0 313 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 FAM167A-AS1Q96KT0 104 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 SLC25A2Q9BXI2 301 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 PROCRQ9UNN8 238 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 AMMECR1Q9Y4X0 333 aaPredicted RBP14.29□□□□□ -0.12
SYNE3-202ENST00000553340 PPIAL4AQ9Y536 164 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 TNCP24821 2201 aa14.29□□□□□ -0.12
SYNE3-202ENST00000553340 CT45A6P0DMU7 189 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 CT45A5P0DMU8 189 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 CT45A7P0DMV0 189 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 CD59P13987 128 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 ALKBH2Q6NS38 261 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 FAM231DQ6ZW35 169 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 NBEAQ8NFP9 2946 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 SARAFQ96BY9 339 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 LINC00479Q96M42 142 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 ZNF355PQ9NSJ1 428 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 BET1LQ9NYM9 111 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 TRAV5A0A0B4J249 113 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 HSBP1O75506 76 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 MFAP2P55001 183 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 SPACA3Q8IXA5 215 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 CACNG8Q8WXS5 425 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 CLEC7AQ9BXN2 247 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 PRO3102Q9H379 93 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 SLC25A15Q9Y619 301 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 DSCAML1Q8TD84 2053 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 DSCAMO60469 2012 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 TCF21O43680 179 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 KLF3P57682 345 aaPredicted RBP14.28□□□□□ -0.12
SYNE3-202ENST00000553340 MORN5Q5VZ52 161 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 MBD6Q96DN6 1003 aa14.28□□□□□ -0.12
SYNE3-202ENST00000553340 YLPM1P49750 1951 aaKnown RBP14.27□□□□□ -0.12
SYNE3-202ENST00000553340 CACNA1GO43497 2377 aa14.27□□□□□ -0.12
SYNE3-202ENST00000553340 PSMB11A5LHX3 300 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 SAA1P0DJI8 122 aaPredicted RBP14.27□□□□□ -0.13
SYNE3-202ENST00000553340 DUX4L9Q6RFH8 374 aaPredicted RBP14.27□□□□□ -0.13
SYNE3-202ENST00000553340 ATOH7Q8N100 152 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 OR10W1Q8NGF6 305 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 FAM222BQ8WU58 562 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 GRAMD2BQ96HH9 432 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 ZNF714Q96N38 554 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 DLL1O00548 723 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 TNXAQ16473 311 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 TBR1Q16650 682 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 HES3Q5TGS1 186 aa14.27□□□□□ -0.13
SYNE3-202ENST00000553340 SLC25A48Q6ZT89 311 aaKnown RBP14.27□□□□□ -0.13
SYNE3-202ENST00000553340 TNRC18O15417 2968 aaPredicted RBP14.26□□□□□ -0.13
SYNE3-202ENST00000553340 TANC2Q9HCD6 1990 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 TRAV34A0A0B4J273 112 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 NDUFB8O95169 186 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 NUP35Q8NFH5 326 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 CHRDL1Q9BU40 450 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 SAP30LQ9HAJ7 183 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 TSPOP30536 169 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 ERHP84090 104 aaKnown RBP14.26□□□□□ -0.13
SYNE3-202ENST00000553340 LCN12Q6JVE5 192 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 VHLLQ6RSH7 139 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 OR2T6Q8NHC8 308 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 SNRNP40Q96DI7 357 aaKnown RBP14.26□□□□□ -0.13
SYNE3-202ENST00000553340 RNF7Q9UBF6 113 aa14.26□□□□□ -0.13
SYNE3-202ENST00000553340 MRPS16Q9Y3D3 137 aaKnown RBP14.26□□□□□ -0.13
SYNE3-202ENST00000553340 INTS1Q8N201 2190 aaKnown RBP14.25□□□□□ -0.13
SYNE3-202ENST00000553340 PRRC2CQ9Y520 2896 aaKnown RBP14.25□□□□□ -0.13
SYNE3-202ENST00000553340 C20orf202A1L168 122 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms