RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 Q6ZRM9 215 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 GBGT1Q8N5D6 347 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 KCNE4Q8WWG9 221 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF501Q96CX3 271 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-203ENST00000547825 PGLYRP4Q96LB8 373 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 TMEM56Q96MV1 263 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 TM2D1Q9BX74 207 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 NPCDR1Q9BY65 106 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 WNT5BQ9H1J7 359 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 WDR54Q9H977 334 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 PLSCR4Q9NRQ2 329 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 FAM30AQ9NZY2 134 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 IGKV1-27A0A075B6S5 117 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 J3QT63 122 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 ISLRO14498 428 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 P01737 135 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 GZMHP20718 246 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 CDKN1AP38936 164 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 LOXL3P58215 753 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 IGLV3-21P80748 117 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-203ENST00000547825 MRPS11P82912 194 aaKnown RBP4.57□□□□□ -1.68
LIMA1-203ENST00000547825 MLANAQ16655 118 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 MAJINQ3KP22 176 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 CEACAM21Q3KPI0 293 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF718Q3SXZ3 478 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 ASPHD1Q5U4P2 390 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 MOB1BQ7L9L4 216 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 LHFPL4Q7Z7J7 247 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 C1orf147Q96MC9 270 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-203ENST00000547825 MRPL13Q9BYD1 178 aaKnown RBP4.57□□□□□ -1.68
LIMA1-203ENST00000547825 NPVFQ9HCQ7 196 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 CLEC5AQ9NY25 188 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 LSM4Q9Y4Z0 139 aaKnown RBP4.57□□□□□ -1.68
LIMA1-203ENST00000547825 HILPDAQ9Y5L2 63 aa4.57□□□□□ -1.68
LIMA1-203ENST00000547825 J3QR06 171 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 M0R1B8 84 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 CA11O75493 328 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 CA2P00918 260 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 GCSHP23434 173 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 MAS1LP35410 378 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 TGIF2LYQ8IUE0 185 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 ARL6IP6Q8N6S5 226 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 TMEM116Q8NCL8 245 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 FGFBP3Q8TAT2 258 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 SLC25A40Q8TBP6 338 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 TMEM167BQ9NRX6 74 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 MPC1Q9Y5U8 109 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 ASH1LQ9NR48 2969 aaKnown RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 SPTBN4Q9H254 2564 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 ADGRG4Q8IZF6 3080 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 OR4C46A6NHA9 309 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 LRRC30A6NM36 301 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 PPIHO43447 177 aaKnown RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 RFPL3SP0C7P2 107 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 SRD5A2P31213 254 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF83P51522 516 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 SUB1P53999 127 aaKnown RBP eCLIP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 BPIFB3P59826 476 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 LYZP61626 148 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 RPL8P62917 257 aaKnown RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 TDRG1Q3Y452 100 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 SLC35E4Q6ICL7 350 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 Q6ZPA2 131 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 NIT1Q86X76 327 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 MEGF9Q9H1U4 602 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 FNDC4Q9H6D8 234 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 DYNLRB1Q9NP97 96 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 IGHV3-72A0A0B4J1Y9 119 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 KLRC4-KLRK1H3BQV0 150 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 ETV2O00321 342 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 ZNF207O43670 478 aaKnown RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 CLDN14O95500 239 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 GCHFRP30047 84 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 LCN2P80188 198 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 FBLN7Q53RD9 439 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 AMMECR1LQ6DCA0 310 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 HCP5Q6MZN7 132 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 MDP1Q86V88 176 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 PDPNQ86YL7 162 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 Q8NA96 180 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 BEND2Q8NDZ0 799 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 DEFB124Q8NES8 71 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 MBD3L2Q8NHZ7 208 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 PSMG3Q9BT73 122 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-203ENST00000547825 PRORYQ9H606 182 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 RAB9BQ9NP90 201 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 TIMM9Q9Y5J7 89 aa4.56□□□□□ -1.68
LIMA1-203ENST00000547825 TRGV10A0A0A0MS01 117 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 PGPA6NDG6 321 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 K7EQM0 130 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 TNFSF13O75888 250 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 SFTA2Q6UW10 78 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 KMT5CQ86Y97 462 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 HES7Q9BYE0 225 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 EGLN1Q9GZT9 426 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 GNB4Q9HAV0 340 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 TMEM56-RWDD3S4R434 201 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 IGSF10Q6WRI0 2623 aa4.55□□□□□ -1.68
LIMA1-203ENST00000547825 TNCP24821 2201 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms