RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FBXO7Q9Y3I1 522 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 RFNGQ9Y644 331 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 ABCA1O95477 2261 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 SH2D7A6NKC9 451 aaPredicted RBP16.6■□□□□ 0.25
VPS28-208ENST00000527797 NPIPB5A8MRT5 1133 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 MPDU1O75352 247 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 CRYGCP07315 174 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 NMBP08949 121 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 SRP14P37108 136 aaKnown RBP16.6■□□□□ 0.25
VPS28-208ENST00000527797 AKR1C1Q04828 323 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 MLANAQ16655 118 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 ASPHD1Q5U4P2 390 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 ETFRF1Q6IPR1 90 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 TMEM182Q6ZP80 229 aaPredicted RBP16.6■□□□□ 0.25
VPS28-208ENST00000527797 C19orf35Q6ZS72 473 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 IL17RELQ6ZVW7 336 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 SLC16A13Q7RTY0 426 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 LFNGQ8NES3 379 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 SGMS2Q8NHU3 365 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 ZNF48Q96MX3 618 aaPredicted RBP16.6■□□□□ 0.25
VPS28-208ENST00000527797 TIMM9Q9Y5J7 89 aa16.6■□□□□ 0.25
VPS28-208ENST00000527797 TSPAN9O75954 239 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 ZNF709Q8N972 641 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 SLC35E1Q96K37 410 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 NPCDR1Q9BY65 106 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 ITPR3Q14573 2671 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 UMAD1C9J7I0 102 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 C17orf112F2Z3M2 114 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 ATP6V0E1O15342 81 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 RAB5CP51148 216 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 GAMTQ14353 236 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 CENPVQ7Z7K6 275 aaPredicted RBP16.59■□□□□ 0.25
VPS28-208ENST00000527797 TMEM68Q96MH6 324 aa16.59■□□□□ 0.25
VPS28-208ENST00000527797 FNDC4Q9H6D8 234 aaPredicted RBP16.59■□□□□ 0.25
VPS28-208ENST00000527797 ZNF705EA8MWA4 302 aaPredicted RBP16.58■□□□□ 0.24
VPS28-208ENST00000527797 SERF2P84101 59 aa16.58■□□□□ 0.24
VPS28-208ENST00000527797 C9orf152Q5JTZ5 239 aa16.58■□□□□ 0.24
VPS28-208ENST00000527797 TEPPQ6URK8 271 aa16.58■□□□□ 0.24
VPS28-208ENST00000527797 UNQ5815/PRO19632Q6UWF5 114 aa16.58■□□□□ 0.24
VPS28-208ENST00000527797 TMEM144Q7Z5S9 345 aa16.58■□□□□ 0.24
VPS28-208ENST00000527797 PLXNB1O43157 2135 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 CYB5BO43169 146 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 PRH1P02810 166 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 HNF1AP20823 631 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 AKR1C8PQ5T2L2 129 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 OR2T6Q8NHC8 308 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 SAT2Q96F10 170 aaPredicted RBP16.57■□□□□ 0.24
VPS28-208ENST00000527797 TMUB1Q9BVT8 246 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 LSM4Q9Y4Z0 139 aaKnown RBP16.57■□□□□ 0.24
VPS28-208ENST00000527797 DMRT1Q9Y5R6 373 aa16.57■□□□□ 0.24
VPS28-208ENST00000527797 LINC01548A6NM66 108 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 RAB31Q13636 194 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 ECSCRQ19T08 205 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 OR5T1Q8NG75 326 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 TNFRSF19Q9NS68 423 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 VPREB3Q9UKI3 123 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 TRIM77I1YAP6 450 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 MT-CO2P00403 227 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 BLOC1S1P78537 153 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 ACY3Q96HD9 319 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 MGST2Q99735 147 aa16.56■□□□□ 0.24
VPS28-208ENST00000527797 HOXA3O43365 443 aaPredicted RBP16.55■□□□□ 0.24
VPS28-208ENST00000527797 CAMLGP49069 296 aa16.55■□□□□ 0.24
VPS28-208ENST00000527797 AKIRIN2Q53H80 203 aa16.55■□□□□ 0.24
VPS28-208ENST00000527797 SLC35E3Q7Z769 313 aa16.55■□□□□ 0.24
VPS28-208ENST00000527797 SIGLECL1Q8N7X8 197 aa16.55■□□□□ 0.24
VPS28-208ENST00000527797 FAM110DQ8TAY7 271 aaPredicted RBP16.55■□□□□ 0.24
VPS28-208ENST00000527797 AGPAT2O15120 278 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 IGHG2P01859 326 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 BLCAPP62952 87 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 NPIPB3Q92617 1050 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 CXorf58Q96LI9 332 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 KCNIP2Q9NS61 270 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 TMEM160Q9NX00 188 aa16.54■□□□□ 0.24
VPS28-208ENST00000527797 IGLV11-55A0A075B6I3 123 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 LINC00862A6NCI5 91 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 I3L2K1 104 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 SOX15O60248 233 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 IGHV3-48P01763 117 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 CRIP2P52943 208 aaPredicted RBP16.53■□□□□ 0.24
VPS28-208ENST00000527797 ELLP55199 621 aaPredicted RBP16.53■□□□□ 0.24
VPS28-208ENST00000527797 DPPA3Q6W0C5 159 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 Q6ZRG5 221 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 SLC7A5P1Q8MH63 180 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 GGTLC1Q9BX51 225 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 THYN1Q9P016 225 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 CSPG4Q6UVK1 2322 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 CSMD1Q96PZ7 3565 aa16.53■□□□□ 0.24
VPS28-208ENST00000527797 G3V318 75 aa16.52■□□□□ 0.24
VPS28-208ENST00000527797 HIST1H1BP16401 226 aaKnown RBP16.52■□□□□ 0.24
VPS28-208ENST00000527797 RND2P52198 227 aa16.52■□□□□ 0.24
VPS28-208ENST00000527797 FFAR4Q5NUL3 377 aa16.52■□□□□ 0.24
VPS28-208ENST00000527797 FAM213BQ8TBF2 198 aa16.52■□□□□ 0.24
VPS28-208ENST00000527797 FANCD2OSQ96PS1 177 aa16.52■□□□□ 0.24
VPS28-208ENST00000527797 IGHV3-21A0A0B4J1V1 117 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 TRAV41A0A0B4J266 112 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 MBP02144 154 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 IGF1P05019 195 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 FHITP49789 147 aa16.52■□□□□ 0.23
VPS28-208ENST00000527797 TMEM41BQ5BJD5 291 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms