RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 LEMD1Q68G75 181 aa13.56□□□□□ -0.24
PCDHA3-201ENST00000522353 CYB5R2Q6BCY4 276 aa13.56□□□□□ -0.24
PCDHA3-201ENST00000522353 Q5BKY6 102 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 BMPERQ8N8U9 685 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 OR10S1Q8NGN2 331 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 KLK15Q9H2R5 256 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 UQCR10Q9UDW1 63 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 LTBP1Q14766 1721 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 IGHV3OR16-8A0A075B7F1 116 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 EIF3GO75821 320 aaKnown RBP eCLIP13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 SDF2L1Q9HCN8 221 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 SLC25A15Q9Y619 301 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 ARHGEF17Q96PE2 2063 aaPredicted RBP13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 FHITP49789 147 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 TCTAP57738 103 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 GTSCR1Q86UQ5 136 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 CRYGSP22914 178 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 CMC4P56277 68 aaPredicted RBP13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 SSC4DQ8WTU2 575 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 A0A0G2JNJ9 132 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 SLC25A16P16260 332 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 SLC25A34Q6PIV7 304 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 CIARTQ8N365 385 aaPredicted RBP13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 Q9UFV3 132 aa13.55□□□□□ -0.24
PCDHA3-201ENST00000522353 TRAV14DV4A0A0A6YYC5 116 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 PSMB11A5LHX3 300 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 KCNS1Q96KK3 526 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 C15orf61A6NNL5 157 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 EMP1P54849 157 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 K7ERU9 68 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 Q0VFX4 171 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 MINOS1Q5TGZ0 78 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 MINOS1-NBL1R4GNA1 71 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 MYO7BQ6PIF6 2116 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 K7ENP7 123 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 PEX7O00628 323 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 FABP2P12104 132 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 CD24P25063 80 aa13.54□□□□□ -0.24
PCDHA3-201ENST00000522353 IGHG3P01860 377 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 OR4D5Q8NGN0 318 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 LYZL4Q96KX0 146 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 HIST1H4GQ99525 98 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 RTBDNQ9BSG5 229 aaPredicted RBP13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 RPUSD1Q9UJJ7 312 aaKnown RBP13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 LOC107984156A0A0G2JMH3 177 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 ARL17AQ8IVW1 177 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 IGKV1-9A0A0C4DH69 117 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 LYPD3O95274 346 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 KIAA1644Q3SXP7 199 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 ALKBH7Q9BT30 221 aaPredicted RBP13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 GPR61Q9BZJ8 451 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 CGAP01215 116 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 Q6AWC8 147 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 RNF125Q96EQ8 232 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 FMC1Q96HJ9 113 aa13.53□□□□□ -0.24
PCDHA3-201ENST00000522353 EFNA2O43921 213 aa13.52□□□□□ -0.24
PCDHA3-201ENST00000522353 PRB3Q04118 309 aaPredicted RBP13.52□□□□□ -0.24
PCDHA3-201ENST00000522353 REC114Q7Z4M0 266 aa13.52□□□□□ -0.24
PCDHA3-201ENST00000522353 NSUN5P1Q3KNT7 163 aa13.52□□□□□ -0.24
PCDHA3-201ENST00000522353 HEPN1Q6WQI6 88 aa13.52□□□□□ -0.24
PCDHA3-201ENST00000522353 FGFBP3Q8TAT2 258 aa13.52□□□□□ -0.24
PCDHA3-201ENST00000522353 DNLZQ5SXM8 178 aa13.52□□□□□ -0.25
PCDHA3-201ENST00000522353 TRAV41A0A0B4J266 112 aa13.52□□□□□ -0.25
PCDHA3-201ENST00000522353 TMEM178BH3BS89 294 aa13.52□□□□□ -0.25
PCDHA3-201ENST00000522353 LEPP41159 167 aa13.52□□□□□ -0.25
PCDHA3-201ENST00000522353 FOXG1P55316 489 aaPredicted RBP13.52□□□□□ -0.25
PCDHA3-201ENST00000522353 H7C2G1 150 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 C11orf44Q8N8P7 122 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 FAM131CQ96AQ9 280 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 JOSD1Q15040 202 aaPredicted RBP13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 SOX21Q9Y651 276 aaPredicted RBP13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 GAGE10A6NGK3 116 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 ZP1P60852 638 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 LRTM2Q8N967 370 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 SCN5AQ14524 2016 aa13.51□□□□□ -0.25
PCDHA3-201ENST00000522353 IGHV2-26A0A0B4J1V2 119 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 EGR1P18146 543 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 RNASE4P34096 147 aaKnown RBP13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 CDX1P47902 265 aaPredicted RBP13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 HINT1P49773 126 aaPredicted RBP13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 TFF3Q07654 80 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 ASCL2Q99929 193 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 PMCHL2Q9BQD1 86 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 FAM89BQ8N5H3 189 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 C2orf88Q9BSF0 95 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 MPTX1A8MV57 137 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 DUTP33316 252 aaKnown RBP13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 PAX8Q06710 450 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 LCTP09848 1927 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 ZNF646O15015 1829 aaPredicted RBP13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 A0A1B0GUT8 65 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 A0A1B0GW15 77 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 Q9H3A6 140 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 OTORQ9NRC9 128 aa13.5□□□□□ -0.25
PCDHA3-201ENST00000522353 C7orf71A4D174 169 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 FAM90A9PA6NNJ1 464 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 PRCDQ00LT1 54 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 COTL1Q14019 142 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 VMO1Q7Z5L0 202 aa13.49□□□□□ -0.25
PCDHA3-201ENST00000522353 RNF5Q99942 180 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms