RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 HIST1H1EP10412 219 aaKnown RBP8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR4P4Q8NGL7 312 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR4D5Q8NGN0 318 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MBD3L1Q8WWY6 194 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FNDC4Q9H6D8 234 aaPredicted RBP8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ONECUT1Q9UBC0 465 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR4C46A6NHA9 309 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 H0Y980 276 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LEPROTL1O95214 131 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 NAPSAO96009 420 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CSRP1P21291 193 aaKnown RBP8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LRRC75BQ2VPJ9 315 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LCN12Q6JVE5 192 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FAM89BQ8N5H3 189 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 GATAD1Q8WUU5 269 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ZNRD1Q9P1U0 126 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRAV9-2A0A087WT02 112 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PPIAL4DF5H284 164 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TNFRSF1AP19438 455 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ATP5G3P48201 142 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 RPL31P62899 125 aaKnown RBP8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MPV17L2Q567V2 206 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TM2D1Q9BX74 207 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 RNF7Q9UBF6 113 aa8.96□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 HYPMO75409 117 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CXorf1O96002 111 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 LINC00869P0C866 280 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 DEFA4P12838 97 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PSG5Q15238 335 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MOB3BQ86TA1 216 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 DRAM1Q8N682 238 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 KCNS1Q96KK3 526 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IL36BQ9NZH7 164 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TNRC6AQ8NDV7 1962 aaKnown RBP8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZNF324O75467 553 aaPredicted RBP8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 Q6ZWC4 215 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FGFRL1Q8N441 504 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PNKDQ8N490 385 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZNF525Q8N782 197 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PRSS3P2Q8NHM4 247 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TMEM70Q9BUB7 260 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SPRY4Q9C004 299 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PLSCR2Q9NRY7 297 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PXMP4Q9Y6I8 212 aa8.96□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TRBV9A0A0B4J1U6 114 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 MLNRO43193 412 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 NDUFB3O43676 98 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CD3EP07766 207 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TDRG1Q3Y452 100 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PIP4P1Q86T03 277 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RBMXL3Q8N7X1 1067 aaKnown RBP8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 HSPB8Q9UJY1 196 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IGHV1-69-2A0A0G2JMI3 117 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PRSS47A8MTI9 375 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RAMP3O60896 148 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CD40P25942 277 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 DUX4L9Q6RFH8 374 aaPredicted RBP8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZDHHC16Q969W1 377 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TMEM186Q96B77 213 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZNF355PQ9NSJ1 428 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ARHGAP32A7KAX9 2087 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CNIH1O95406 144 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IGLC2P0DOY2 106 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IGLC3P0DOY3 106 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CCL3L1P16619 93 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ID3Q02535 119 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IL15RAQ13261 267 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 COA6Q5JTJ3 125 aaKnown RBP8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 DOLPP1Q86YN1 238 aa8.95□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CEACAM18A8MTB9 384 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SS18L1O75177 396 aaPredicted RBP8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 PQLC2Q6ZP29 291 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 LRTM2Q8N967 370 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 TXNDC17Q9BRA2 123 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 FGF23Q9GZV9 251 aaPredicted RBP8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 UBTD1Q9HAC8 227 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GNB4Q9HAV0 340 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 OOEPA6NGQ2 149 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 H3BUT2 72 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 C3orf79P0CE67 100 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 WDR82Q6UXN9 313 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GTSF1LQ9H1H1 148 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZNF462Q96JM2 2506 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 JMJD1CQ15652 2540 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 IBA57Q5T440 356 aaKnown RBP8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ZNF841Q6ZN19 808 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 SIGMAR1Q99720 223 aa8.94□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 C17orf98A8MV24 154 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ARL14EPLP0DKL9 152 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CD24P25063 80 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 UCP1P25874 307 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 WDR86Q86TI4 376 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 RNF138Q8WVD3 245 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 C7orf71A4D174 169 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 AMY1AP04745 511 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 GPX1P07203 203 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 CD1BP29016 333 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 ACP7Q6ZNF0 438 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 LINC01551Q86U37 167 aa8.93□□□□□ -0.98
MSH5-SAPCD1-207ENST00000493662 COMMD5Q9GZQ3 224 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms