RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	TSC22D2	O75157	780 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	CFD	P00746	253 aa	Predicted RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	IFNA17	P01571	189 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	H2AFB2	P0C5Z0	115 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	C8orf88	P0DMB2	117 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	RNASE2	P10153	161 aa	Known RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	MYOD1	P15172	320 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	CD33	P20138	364 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	VAMP1	P23763	118 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	HOXD3	P31249	432 aa	Predicted RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	NPBWR1	P48145	328 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	GNB1	P62873	340 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	REL	Q04864	619 aa	Predicted RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	SRSF4	Q08170	494 aa	Known RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	IL15RA	Q13261	267 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	SP6	Q3SY56	376 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	LCNL1	Q6ZST4	164 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	C8orf86	Q6ZUL3	223 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	LYZL2	Q7Z4W2	148 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	TMED4	Q7Z7H5	227 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	SLC24A4	Q8NFF2	622 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	OR4D5	Q8NGN0	318 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	OR4X1	Q8NH49	305 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	RNASE11	Q8TAA1	199 aa	Known RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	DPF1	Q92782	380 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	TAF15	Q92804	592 aa	Known RBP eCLIP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	CCDC140	Q96MF4	163 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	GGACT	Q9BVM4	153 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	ELOVL1	Q9BW60	279 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	GNB4	Q9HAV0	340 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	ENY2	Q9NPA8	101 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	ZC4H2	Q9NQZ6	224 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	C21orf62	Q9NYP8	219 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	TECR	Q9NZ01	308 aa	Known RBP	3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	LINC00527	Q9UJ94	153 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	FBXL7	Q9UJT9	491 aa		3.91	□□□□□ -1.78
HDAC6-223	ENST00000480525	TRAV2	A0A0B4J234	112 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	TRAV25	A0A0B4J276	109 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	MFSD2B	A6NFX1	497 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	HMX3	A6NHT5	357 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525		A8MZ25	164 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	PRSS46	E5RG02	174 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525		F8W735	103 aa	Predicted RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525		K7EPK0	472 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	BMPR1B	O00238	502 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	OVOL1	O14753	267 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	TGOLN2	O43493	480 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	SYNGR2	O43760	224 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	CLN5	O75503	358 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	RBMXL2	O75526	392 aa	Known RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	NDUFB8	O95169	186 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	IGLV1-51	P01701	117 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	CTSG	P08311	255 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	NPY1R	P25929	384 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	BMI1	P35226	326 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	NUP62	P37198	522 aa	Predicted RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	HOXA1	P49639	335 aa	Predicted RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	MFAP4	P55083	255 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	YPEL3	P61236	119 aa	Predicted RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	RAB11A	P62491	216 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	IFITM3	Q01628	133 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	RPEL1	Q2QD12	228 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	BEAN1	Q3B7T3	259 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	FAM106A	Q4KMX7	169 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	KHDC1L	Q5JSQ8	128 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	GGNBP1	Q5YKI7	109 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	NRARP	Q7Z6K4	114 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	OR5T1	Q8NG75	326 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	OR10W1	Q8NGF6	305 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	OR9G4	Q8NGQ1	327 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	DTD1	Q8TEA8	209 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	SCARB1	Q8WTV0	552 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	CHAC2	Q8WUX2	184 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	TMEM190	Q8WZ59	177 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	DCUN1D4	Q92564	292 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	SMIM8	Q96KF7	97 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	NMES1	Q9C002	83 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	SEPSECS	Q9HD40	501 aa	Known RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	DAZ1	Q9NQZ3	744 aa	Known RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	MRPL27	Q9P0M9	148 aa	Known RBP	3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	SLC45A2	Q9UMX9	530 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	RNF24	Q9Y225	148 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	UFC1	Q9Y3C8	167 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	MEGF8	Q7Z7M0	2845 aa		3.9	□□□□□ -1.79
HDAC6-223	ENST00000480525	IGHV4OR15-8	A0A075B7B6	117 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525		A0A087WW49	117 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	INMT-MINDY4	F8WBC2	141 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	NUPL2	O15504	423 aa	Known RBP	3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	OR2J3	O76001	311 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	OR2C1	O95371	312 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	FABP1	P07148	127 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	PET100	P0DJ07	73 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	ANXA7	P20073	488 aa	Known RBP	3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	S100A7	P31151	101 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	ARL3	P36405	182 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	NKX2-1	P43699	371 aa	Predicted RBP	3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	MFAP2	P55001	183 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	CD69	Q07108	199 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	NSUN5P1	Q3KNT7	163 aa		3.89	□□□□□ -1.79
HDAC6-223	ENST00000480525	PXDC1	Q5TGL8	231 aa		3.89	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 130.9 ms