RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OR52I2Q8NH67 350 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 PINX1Q96BK5 328 aaKnown RBP12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 GALNT14Q96FL9 552 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 NAA50Q9GZZ1 169 aaKnown RBP12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 ALMS1Q8TCU4 4167 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 A0A0J9YWU9 116 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 GNG7O60262 68 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 IGKV1-5P01602 117 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 IGHV3-48P01763 117 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 CD3DP04234 171 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 P0C879 139 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 ZNF182P17025 639 aaPredicted RBP12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 PI3P19957 117 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 CMC4P56277 68 aaPredicted RBP12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 CTF1Q16619 201 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 IZUMO4Q1ZYL8 232 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 LYG2Q86SG7 212 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 RNF183Q96D59 192 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 TP53RKQ96S44 253 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 EXTL2Q9UBQ6 330 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 MTFP1Q9UDX5 166 aa12.26□□□□□ -0.45
CCDC28B-204ENST00000469003 IGHV3-49A0A0A0MS15 119 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 TRAV14DV4A0A0A6YYC5 116 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 INS-IGF2F8WCM5 200 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 ATG12O94817 140 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 RPL35AP18077 110 aaKnown RBP12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 AKR1C2P52895 323 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 SPINK9Q5DT21 86 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 SLC35G3Q8N808 338 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 C15orf40Q8WUR7 153 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 C6orf62Q9GZU0 229 aaPredicted RBP12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 MAP6D1Q9H9H5 199 aa12.25□□□□□ -0.45
CCDC28B-204ENST00000469003 A0A0B4J293 547 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 C3orf85A0A1B0GTC6 90 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 CXorf65A6NEN9 183 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 ST8SIA3O43173 380 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 SMIM18P0DKX4 95 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 ATF4P18848 351 aaPredicted RBP12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 SNCAP37840 140 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 NPBWR1P48145 328 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 PPP5CP53041 499 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 EWSR1Q01844 656 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 FAM90A2PQ658T7 463 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 APRG1Q8IVJ8 170 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 DUSP18Q8NEJ0 188 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 ZFAND1Q8TCF1 268 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 ABHD1Q96SE0 405 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 GINS3Q9BRX5 216 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 COPZ2Q9P299 210 aa12.24□□□□□ -0.45
CCDC28B-204ENST00000469003 IFNA17P01571 189 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 CD74P04233 296 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 CD5P06127 495 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 TFPI2P48307 235 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 PMS2P11Q13670 270 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 PVRIGQ6DKI7 326 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 TOMM20LQ6UXN7 152 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 CCDC71LQ8N9Z2 235 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 TMEM229BQ8NBD8 167 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 OR4D10Q8NGI6 311 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 TERB2Q8NHR7 220 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 PDCD10Q9BUL8 212 aa12.23□□□□□ -0.45
CCDC28B-204ENST00000469003 IGKV3-7A0A075B6H7 116 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 IGHV3OR16-13A0A075B7E8 117 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 IGHV3-74A0A0B4J1X5 117 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 NUPR2A6NF83 97 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 CORTO00230 105 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 RNASE2P10153 161 aaKnown RBP12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 UCP1P25874 307 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 SUB1P53999 127 aaKnown RBP eCLIP12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 TAS2R19P59542 299 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 TRIM16LQ309B1 348 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 SP6Q3SY56 376 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 GPR107Q5VW38 600 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 ZNF600Q6ZNG1 722 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 TCF24Q7RTU0 167 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 OR13C8Q8NGS7 320 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 VSIRQ9H7M9 311 aa12.22□□□□□ -0.45
CCDC28B-204ENST00000469003 B3GALNT1O75752 331 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 RAB3DO95716 219 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 TMEM50AO95807 157 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 HOXA1P49639 335 aaPredicted RBP12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 PAFAH1B2P68402 229 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 ZNF124Q15973 351 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 SCGB2B2Q4G0G5 96 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 STEAP1BQ6NZ63 245 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 GBGT1Q8N5D6 347 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 TMEM217Q8N7C4 229 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 LINC00476Q8WZB0 136 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 ST8SIA2Q92186 375 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 RRNAD1Q96FB5 475 aaKnown RBP12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 CSTL1Q9H114 145 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 ZFAND3Q9H8U3 227 aa12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 PUS1Q9Y606 427 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC28B-204ENST00000469003 A0A0G2JRQ6 117 aa12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 GABARAPH6UMI1 98 aa12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 ETV6P41212 452 aa12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 SSBP1Q04837 148 aaKnown RBP12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 CEMP1Q6PRD7 247 aaPredicted RBP12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 RNASE11Q8TAA1 199 aaKnown RBP12.2□□□□□ -0.46
CCDC28B-204ENST00000469003 MARCH1Q8TCQ1 289 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms