RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TMEM128Q5BJH2 165 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 EEF1AKMT3Q96AZ1 226 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 PDCD10Q9BUL8 212 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 PLEKHA3Q9HB20 300 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 MED9Q9NWA0 146 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 FBXL7Q9UJT9 491 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 NSG2Q9Y328 171 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 A0A0B4J2A0 478 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 SMLR1H3BR10 107 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 TSC22D2O75157 780 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 PRH1P02810 166 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 REG1AP05451 166 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 OR13C7P0DN81 318 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 MECP2P51608 486 aaKnown RBP9.12□□□□□ -0.95
VPS52-213ENST00000461743 SLURP1P55000 103 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 SUPT4H1P63272 117 aaKnown RBP9.12□□□□□ -0.95
VPS52-213ENST00000461743 TMEM187Q14656 261 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 PDLIM3Q53GG5 364 aaPredicted RBP9.12□□□□□ -0.95
VPS52-213ENST00000461743 TMEM268Q5VZI3 342 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 SELENOHQ8IZQ5 122 aaKnown RBP9.12□□□□□ -0.95
VPS52-213ENST00000461743 OR2C3Q8N628 320 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 SLC35G3Q8N808 338 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 OR10W1Q8NGF6 305 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 OR1P1Q8NH06 330 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 OR52E5Q8NH55 327 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 VN1R17PQ8TDU5 208 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 DCUN1D4Q92564 292 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 HINT2Q9BX68 163 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 SHPKQ9UHJ6 478 aa9.12□□□□□ -0.95
VPS52-213ENST00000461743 DBX1A6NMT0 343 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 SCO1O75880 301 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 NDUFB6O95139 128 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 AKR1C4P17516 323 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 ERHP84090 104 aaKnown RBP9.11□□□□□ -0.95
VPS52-213ENST00000461743 DEFA5Q01523 94 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 RPEL1Q2QD12 228 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 ACSM6Q6P461 480 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 LGI3Q8N145 548 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 LRTM2Q8N967 370 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 DLX4Q92988 240 aaPredicted RBP9.11□□□□□ -0.95
VPS52-213ENST00000461743 ELOVL1Q9BW60 279 aa9.11□□□□□ -0.95
VPS52-213ENST00000461743 BMPR1BO00238 502 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 ST8SIA3O43173 380 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 NDUFB8O95169 186 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 KLF5Q13887 457 aaPredicted RBP9.1□□□□□ -0.95
VPS52-213ENST00000461743 NMSQ5H8A3 153 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 C19orf35Q6ZS72 473 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 TMED4Q7Z7H5 227 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 CCDC140Q96MF4 163 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 ZC4H2Q9NQZ6 224 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.1□□□□□ -0.95
VPS52-213ENST00000461743 GAR1Q9NY12 217 aaKnown RBP9.1□□□□□ -0.95
VPS52-213ENST00000461743 PEMTQ9UBM1 199 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 DMRT1Q9Y5R6 373 aa9.1□□□□□ -0.95
VPS52-213ENST00000461743 A0A0G2JRQ6 117 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 MFSD2BA6NFX1 497 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 CORTO00230 105 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 GGCTO75223 188 aaKnown RBP9.09□□□□□ -0.95
VPS52-213ENST00000461743 SAP30O75446 220 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 IFNA17P01571 189 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 TRBV12-3P01733 135 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 SULT1A3P0DMM9 295 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 SULT1A4P0DMN0 295 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 BTCP35070 178 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 ARL3P36405 182 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 HOXA1P49639 335 aaPredicted RBP9.09□□□□□ -0.95
VPS52-213ENST00000461743 SPCS3P61009 180 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.09□□□□□ -0.95
VPS52-213ENST00000461743 OR11H7Q8NGC8 314 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 OR9G4Q8NGQ1 327 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 ZNF502Q8TBZ5 544 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 ENY2Q9NPA8 101 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 AURKAIP1Q9NWT8 199 aaPredicted RBP9.09□□□□□ -0.95
VPS52-213ENST00000461743 SIGLEC8Q9NYZ4 499 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 CACNG5Q9UF02 275 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 TGP01266 2768 aa9.09□□□□□ -0.95
VPS52-213ENST00000461743 KRBOX1C9JBD0 128 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 LGALS9O00182 355 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 SFT2D2O95562 160 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 SLC25A6P12236 298 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 VAMP1P23763 118 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 FCGR2BP31994 310 aaPredicted RBP9.08□□□□□ -0.96
VPS52-213ENST00000461743 SNCAP37840 140 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 CCR6P51684 374 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 SUB1P53999 127 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS52-213ENST00000461743 IZUMO4Q1ZYL8 232 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 SLC25A24Q6NUK1 477 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 SPSB3Q6PJ21 355 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 BSCL2Q96G97 398 aaPredicted RBP9.08□□□□□ -0.96
VPS52-213ENST00000461743 OR4C12Q96R67 309 aa9.08□□□□□ -0.96
VPS52-213ENST00000461743 A0A1B0GU03 582 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 A8MWP6 167 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 K7EIM0 57 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 HLA-AP01891 365 aaKnown RBP9.07□□□□□ -0.96
VPS52-213ENST00000461743 NUP62P37198 522 aaPredicted RBP9.07□□□□□ -0.96
VPS52-213ENST00000461743 MFAP2P55001 183 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 SYNJ2BPP57105 145 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 PPP1R1AQ13522 171 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 SMCO1Q147U7 214 aa9.07□□□□□ -0.96
VPS52-213ENST00000461743 BSXQ3C1V8 233 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms