RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GATAD1Q8WUU5 269 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 YIPF6Q96EC8 236 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 OR10C1Q96KK4 312 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 PDCD10Q9BUL8 212 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 WFDC10AQ9H1F0 79 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 TMEM231Q9H6L2 316 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 COMMD3Q9UBI1 195 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 SMPXQ9UHP9 88 aa5.27□□□□□ -1.57
VPS41-208ENST00000448833 IGHV7-4-1A0A0J9YVY3 117 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 A0A1W2PS18 150 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 MPTX1A8MV57 137 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 K7EIM0 57 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 DFFBO76075 338 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 RND3P61587 244 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 LSM3P62310 102 aaKnown RBP5.26□□□□□ -1.57
VPS41-208ENST00000448833 PRCDQ00LT1 54 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 PHLDA2Q53GA4 152 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 RNASE10Q5GAN6 216 aaKnown RBP5.26□□□□□ -1.57
VPS41-208ENST00000448833 LYG2Q86SG7 212 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 ARRDC1Q8N5I2 433 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 ZFAND1Q8TCF1 268 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 RNF183Q96D59 192 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 MISP3Q96FF7 219 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 NARS2Q96I59 477 aaKnown RBP5.26□□□□□ -1.57
VPS41-208ENST00000448833 SEC22AQ96IW7 307 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 CHRDL1Q9BU40 450 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 RHPN1-AS1Q9BWJ2 59 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 NXF2Q9GZY0 626 aaKnown RBP5.26□□□□□ -1.57
VPS41-208ENST00000448833 MFFQ9GZY8 342 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 CSTL1Q9H114 145 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 MAP6D1Q9H9H5 199 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 ENY2Q9NPA8 101 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 NSG2Q9Y328 171 aa5.26□□□□□ -1.57
VPS41-208ENST00000448833 SACSQ9NZJ4 4579 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 TRAV30A0A087WSZ9 112 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 TRAV2A0A0B4J234 112 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 INS-IGF2F8WCM5 200 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 I3L2K1 104 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 DNASE2O00115 360 aaPredicted RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 CHEK1O14757 476 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 IFNA17P01571 189 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 CTSDP07339 412 aaPredicted RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 PGAM2P15259 253 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 EIF2B2P49770 351 aaKnown RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 MFAP2P55001 183 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 DEFB135Q30KP9 77 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 TMEM41BQ5BJD5 291 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 CEMP1Q6PRD7 247 aaPredicted RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 SNX29P2Q8IUI4 249 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 SLC35G3Q8N808 338 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 CCDC71LQ8N9Z2 235 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 PINX1Q96BK5 328 aaKnown RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 RRNAD1Q96FB5 475 aaKnown RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 FUNDC2Q9BWH2 189 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 FXYD6Q9H0Q3 95 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 COPZ2Q9P299 210 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 RABL2AQ9UBK7 228 aaPredicted RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 UBQLN2Q9UHD9 624 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 RABL2BQ9UNT1 228 aa5.25□□□□□ -1.57
VPS41-208ENST00000448833 DYNC2H1Q8NCM8 4307 aaKnown RBP5.25□□□□□ -1.57
VPS41-208ENST00000448833 IGHV3-21A0A0B4J1V1 117 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 PIGBOS1A0A0B4J2F0 54 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 A0A0J9YWU9 116 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 C3orf85A0A1B0GTC6 90 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 FAM25AB3EWG3 89 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 FAM25CB3EWG5 89 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 FAM25GB3EWG6 89 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 F8W735 103 aaPredicted RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 FAM229AH3BQW9 127 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 ZNF207O43670 478 aaKnown RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 EIF4EBP3O60516 100 aaPredicted RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 MT-CO2P00403 227 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 IFNA4P05014 189 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 ZNF182P17025 639 aaPredicted RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 NPPCP23582 126 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 RPL5P46777 297 aaKnown RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 AKR1C2P52895 323 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 PIGPP57054 158 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 TCTAP57738 103 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 TAS2R19P59542 299 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 RPL11P62913 178 aaKnown RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 MRPS10P82664 201 aaKnown RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 SSBP1Q04837 148 aaKnown RBP5.24□□□□□ -1.57
VPS41-208ENST00000448833 ODF3L2Q3SX64 289 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 ZNF600Q6ZNG1 722 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 NOXA1Q86UR1 476 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 FAM219AQ8IW50 185 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 CENPSQ8N2Z9 138 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 TERB2Q8NHR7 220 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 LINC00476Q8WZB0 136 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 MRGPRFQ96AM1 343 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 GRAMD2BQ96HH9 432 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 RNF2Q99496 336 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 SELENOKQ9Y6D0 94 aa5.24□□□□□ -1.57
VPS41-208ENST00000448833 HYDINQ4G0P3 5121 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 RPS10-NUDT3A0A1W2PQS6 291 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 DBX1A6NMT0 343 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 ST8SIA3O43173 380 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 HPGDSO60760 199 aa5.23□□□□□ -1.57
VPS41-208ENST00000448833 TMEM50AO95807 157 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms