RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 Q5BKY6 102 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 PAPPA-AS1Q5QFB9 102 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 ZMAT5Q9UDW3 170 aaKnown RBP9.9□□□□□ -0.82
PTPRF-205ENST00000414879 DNAJC13O75165 2243 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 TNFSF13O75888 250 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 PLAUP00749 431 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 VDAC2P45880 294 aaPredicted RBP9.9□□□□□ -0.82
PTPRF-205ENST00000414879 HGFACQ04756 655 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 MBNL3Q9NUK0 354 aaKnown RBP9.9□□□□□ -0.82
PTPRF-205ENST00000414879 TIMM23O14925 209 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 SRSF4Q08170 494 aaKnown RBP9.9□□□□□ -0.82
PTPRF-205ENST00000414879 PRSS8Q16651 343 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 SPSB3Q6PJ21 355 aa9.9□□□□□ -0.82
PTPRF-205ENST00000414879 MLNRO43193 412 aa9.9□□□□□ -0.83
PTPRF-205ENST00000414879 PRTN3P24158 256 aa9.9□□□□□ -0.83
PTPRF-205ENST00000414879 PSMG4Q5JS54 123 aa9.9□□□□□ -0.83
PTPRF-205ENST00000414879 PUSL1Q8N0Z8 303 aaKnown RBP9.9□□□□□ -0.83
PTPRF-205ENST00000414879 GOLGB1Q14789 3259 aaKnown RBP9.89□□□□□ -0.83
PTPRF-205ENST00000414879 H7C1H1 209 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 TCF15Q12870 199 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 SRSF6Q13247 344 aaKnown RBP9.89□□□□□ -0.83
PTPRF-205ENST00000414879 ALPK3Q96L96 1907 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 A0A087WV48 116 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 A0A087WWC5 75 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 HLA-DRB1P01911 266 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 FAM159AQ6UWV7 190 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 A0A0B4J293 547 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 DUSP14O95147 198 aaKnown RBP9.89□□□□□ -0.83
PTPRF-205ENST00000414879 BEND2Q8NDZ0 799 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 SFRP2Q96HF1 295 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 PEX7O00628 323 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 SMAD7O15105 426 aaKnown RBP9.89□□□□□ -0.83
PTPRF-205ENST00000414879 IFITM2Q01629 132 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 MAP1LC3AQ9H492 121 aa9.89□□□□□ -0.83
PTPRF-205ENST00000414879 KIAA1549LQ6ZVL6 1849 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 IGKV1D-8A0A087WSZ0 117 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 IGHV1-3A0A0C4DH29 117 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 CKS2P33552 79 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 GOLT1AQ6ZVE7 132 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 VMO1Q7Z5L0 202 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 PACRGQ96M98 296 aaPredicted RBP9.88□□□□□ -0.83
PTPRF-205ENST00000414879 E7EQL1 145 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 MBD3L1Q8WWY6 194 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 PARD6GQ9BYG4 376 aaPredicted RBP9.88□□□□□ -0.83
PTPRF-205ENST00000414879 IGLV3-9A0A075B6K5 115 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 GPR183P32249 361 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 NMSQ5H8A3 153 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 C11orf42Q8N5U0 333 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 ANAPC10Q9UM13 185 aa9.88□□□□□ -0.83
PTPRF-205ENST00000414879 IGKV1D-17A0A075B6S4 117 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 IGHV3OR16-10A0A075B7F0 116 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 CSN3P07498 182 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 RNF125Q96EQ8 232 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 ZFP30Q9Y2G7 519 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 DKK1O94907 266 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 F12P00748 615 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-205ENST00000414879 TFPI2P48307 235 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 ICAM4Q14773 271 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 CENPWQ5EE01 88 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 LINC01356Q8N9X3 169 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 ASCL2Q99929 193 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 TMSB15BA0A087X1C1 80 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 TRAV1-1A0A0B4J248 108 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 FAM53AQ6NSI3 398 aaPredicted RBP9.87□□□□□ -0.83
PTPRF-205ENST00000414879 ZCCHC24Q8N2G6 241 aaKnown RBP9.87□□□□□ -0.83
PTPRF-205ENST00000414879 COQ2Q96H96 371 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 AREGP15514 252 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 USMG5Q96IX5 58 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 SLX1AQ9BQ83 275 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 PLXNB3Q9ULL4 1909 aa9.87□□□□□ -0.83
PTPRF-205ENST00000414879 TFF3Q07654 80 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 PMCHL1Q16048 86 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 CRIM1Q9NZV1 1036 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 TRAV41A0A0B4J266 112 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 BUB1B-PAK6H3BSN5 160 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 J3KRW8 73 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 RAMP3O60896 148 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 SRP19P09132 144 aaKnown RBP9.86□□□□□ -0.83
PTPRF-205ENST00000414879 EGR1P18146 543 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 KCNS1Q96KK3 526 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 A6NNC1 897 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 FGF16O43320 207 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 RHOGP84095 191 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 LYNX1G3V0Z9 82 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 NPFFO15130 113 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 LYNX1P0DP58 116 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 HBBP68871 147 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 TEX36Q5VZQ5 186 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 LEMD1Q68G75 181 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 TRGV9Q99603 122 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 CACNA1GO43497 2377 aa9.86□□□□□ -0.83
PTPRF-205ENST00000414879 A8MXK9 166 aa9.85□□□□□ -0.83
PTPRF-205ENST00000414879 H0YJW9 148 aa9.85□□□□□ -0.83
PTPRF-205ENST00000414879 GGCTO75223 188 aaKnown RBP9.85□□□□□ -0.83
PTPRF-205ENST00000414879 HTN1P15515 57 aa9.85□□□□□ -0.83
PTPRF-205ENST00000414879 CCL20P78556 96 aa9.85□□□□□ -0.83
PTPRF-205ENST00000414879 HIST1H1AQ02539 215 aaPredicted RBP9.85□□□□□ -0.83
PTPRF-205ENST00000414879 CLEC19AQ6UXS0 136 aa9.85□□□□□ -0.83
PTPRF-205ENST00000414879 LINC00311Q8N616 119 aa9.85□□□□□ -0.83
PTPRF-205ENST00000414879 C8orf46Q8TAG6 207 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms