RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	DMRT1	Q9Y5R6	373 aa		10.2	□□□□□ -0.78
SF1-206	ENST00000413725		U3KQ87	197 aa		10.2	□□□□□ -0.78
SF1-206	ENST00000413725		I3L521	148 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	TSPAN15	O95858	294 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	IAPP	P10997	89 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	NPY1R	P25929	384 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	MFAP2	P55001	183 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	ATP5I	P56385	69 aa	Predicted RBP	10.19	□□□□□ -0.78
SF1-206	ENST00000413725	RPP30	P78346	268 aa	Known RBP	10.19	□□□□□ -0.78
SF1-206	ENST00000413725	BSX	Q3C1V8	233 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	C2orf83	Q53S99	150 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	ZNF343	Q6P1L6	599 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	VN1R17P	Q8TDU5	208 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	DPF1	Q92782	380 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	MGAT4C	Q9UBM8	478 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	NOTCH3	Q9UM47	2321 aa		10.19	□□□□□ -0.78
SF1-206	ENST00000413725	TRBV7-1	A0A0A6YYK4	115 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	CCL24	O00175	119 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	SSSCA1	O60232	199 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	HSPB1	P04792	205 aa	Known RBP	10.18	□□□□□ -0.78
SF1-206	ENST00000413725	MYCNOS	P40205	109 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	POLR2G	P62487	172 aa	Known RBP eCLIP	10.18	□□□□□ -0.78
SF1-206	ENST00000413725	CYCS	P99999	105 aa	Known RBP	10.18	□□□□□ -0.78
SF1-206	ENST00000413725	DEFB136	Q30KP8	78 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	OR1N2	Q8NGR9	330 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	PINX1	Q96BK5	328 aa	Known RBP	10.18	□□□□□ -0.78
SF1-206	ENST00000413725	RAB40C	Q96S21	281 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	MED28	Q9H204	178 aa		10.18	□□□□□ -0.78
SF1-206	ENST00000413725	RANGRF	Q9HD47	186 aa	Predicted RBP	10.18	□□□□□ -0.78
SF1-206	ENST00000413725	PEF1	Q9UBV8	284 aa	Known RBP	10.18	□□□□□ -0.78
SF1-206	ENST00000413725	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	10.17	□□□□□ -0.78
SF1-206	ENST00000413725	RPS10-NUDT3	A0A1W2PQS6	291 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	ANKRD34B	A5PLL1	514 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	MFSD2B	A6NFX1	497 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	SIX6	O95475	246 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	MBP	P02686	304 aa	Predicted RBP	10.17	□□□□□ -0.78
SF1-206	ENST00000413725	OPRK1	P41145	380 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	S100A10	P60903	97 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	RAB11A	P62491	216 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	ZNF616	Q08AN1	781 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	PVRIG	Q6DKI7	326 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	C11orf87	Q6NUJ2	197 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	OR11H1	Q8NG94	326 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	RNASEH2C	Q8TDP1	164 aa	Known RBP	10.17	□□□□□ -0.78
SF1-206	ENST00000413725	RAX2	Q96IS3	184 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	NMES1	Q9C002	83 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	GAR1	Q9NY12	217 aa	Known RBP	10.17	□□□□□ -0.78
SF1-206	ENST00000413725	C21orf62	Q9NYP8	219 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	LSM5	Q9Y4Y9	91 aa	Known RBP	10.17	□□□□□ -0.78
SF1-206	ENST00000413725		S4R3C0	116 aa		10.17	□□□□□ -0.78
SF1-206	ENST00000413725	VWF	P04275	2813 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	IGHV4OR15-8	A0A075B7B6	117 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725		A0A087WW49	117 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	LINC01619	G3V211	115 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725		I3L2K1	104 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725		K7EIM0	57 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725		K7EPK0	472 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725		L7N2F9	121 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	MT-CO2	P00403	227 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	IGHV3-23	P01764	117 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	IFNA4	P05014	189 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	OR8U8	P0C7N1	319 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	PVALB	P20472	110 aa	Predicted RBP	10.16	□□□□□ -0.78
SF1-206	ENST00000413725	ZP3	P21754	424 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	VAMP2	P63027	116 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	SPANXN5	Q5MJ07	72 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	ETV3L	Q6ZN32	361 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	ZNF502	Q8TBZ5	544 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	SCARB1	Q8WTV0	552 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	SMIM8	Q96KF7	97 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	DUX3	Q96PT4	197 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	PSENEN	Q9NZ42	101 aa		10.16	□□□□□ -0.78
SF1-206	ENST00000413725	PAIP2B	Q9ULR5	123 aa	Known RBP	10.16	□□□□□ -0.78
SF1-206	ENST00000413725	RCL1	Q9Y2P8	373 aa	Known RBP	10.16	□□□□□ -0.78
SF1-206	ENST00000413725	STRAP	Q9Y3F4	350 aa	Known RBP	10.16	□□□□□ -0.78
SF1-206	ENST00000413725	DNHD1	Q96M86	4753 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	IGHV3-21	A0A0B4J1V1	117 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	C15orf62	A8K5M9	175 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725		H3BP45	60 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	MFAP4	P55083	255 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	H2BFS	P57053	126 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	TAS2R30	P59541	319 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	RRAS2	P62070	204 aa	Predicted RBP	10.15	□□□□□ -0.78
SF1-206	ENST00000413725	IL15RA	Q13261	267 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	FHL3	Q13643	280 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725		Q56UQ5	140 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	PRR31	Q5SQ13	230 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	ETFRF1	Q6IPR1	90 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	ACSM6	Q6P461	480 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	CLEC19A	Q6UXS0	136 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	CCDC140	Q96MF4	163 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	ATP6V0B	Q99437	205 aa		10.15	□□□□□ -0.78
SF1-206	ENST00000413725	TRRAP	Q9Y4A5	3859 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	TSC22D2	O75157	780 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	TRBV12-3	P01733	135 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	RLN2	P04090	185 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	GPR183	P32249	361 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	ARL3	P36405	182 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	RAB32	Q13637	225 aa		10.14	□□□□□ -0.79
SF1-206	ENST00000413725	FCN2	Q15485	313 aa		10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms