RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 FAM201AQ5SY85 155 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 TEX38Q6PEX7 206 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 NUDT11Q96G61 164 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 ZNF318Q5VUA4 2279 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 PSMB11A5LHX3 300 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 IGKV3-20P01619 116 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 SAA1P0DJI8 122 aaPredicted RBP12.43□□□□□ -0.42
CHD4-201ENST00000357008 LEPP41159 167 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 ZNF497Q6ZNH5 498 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 C2orf88Q9BSF0 95 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 EPDR1Q9UM22 224 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 IGKV3OR2-268A0A0C4DH90 116 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 IGHV3-23P01764 117 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 GLRX5Q86SX6 157 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 WDR83OSQ9Y284 106 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 S4R3C0 116 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 SCN2AQ99250 2005 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 NDUFA3O95167 84 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 A0A0A6YYD4 124 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 COL11A1P12107 1806 aaPredicted RBP12.42□□□□□ -0.42
CHD4-201ENST00000357008 IGHV3-49A0A0A0MS15 119 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 A0A1B0GW64 132 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 H3BRM9 83 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 HEATR5BQ9P2D3 2071 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 FABP5P3A8MUU1 101 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 IGKV1D-33P01593 117 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 IGKV1-33P01594 117 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 HBDP02042 147 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 IMMP1LQ96LU5 166 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 SEMA5BQ9P283 1151 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 ZNF124Q15973 351 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 ARPC1AQ92747 370 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 TMEM101Q96IK0 257 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 CYTL1Q9NRR1 136 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 SAA2-SAA4A0A096LPE2 208 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 IGHV3-66A0A0C4DH42 116 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 SAA2P0DJI9 122 aaPredicted RBP12.42□□□□□ -0.42
CHD4-201ENST00000357008 GNG5P63218 68 aa12.42□□□□□ -0.42
CHD4-201ENST00000357008 TDRD6O60522 2096 aaKnown RBP12.42□□□□□ -0.42
CHD4-201ENST00000357008 OR5A1Q8NGJ0 315 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 ASCL2Q99929 193 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 POLR2AP24928 1970 aaKnown RBP12.41□□□□□ -0.42
CHD4-201ENST00000357008 IGKV1D-8A0A087WSZ0 117 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 FAM90A9PA6NNJ1 464 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 CXCL1P09341 107 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 LHFPL1Q86WI0 220 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 FDCSPQ8NFU4 85 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 TRAV1-1A0A0B4J248 108 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 AMBPP02760 352 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 PDLIM4P50479 330 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 CD69Q07108 199 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 EFNB3Q15768 340 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 PPP1R27Q86WC6 154 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 CHCHD1Q96BP2 118 aaKnown RBP12.41□□□□□ -0.42
CHD4-201ENST00000357008 MEGF9Q9H1U4 602 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 NHP2Q9NX24 153 aaKnown RBP12.41□□□□□ -0.42
CHD4-201ENST00000357008 RAMP3O60896 148 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 TNFSF13O75888 250 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 EFEMP2O95967 443 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 IGHV1-2P23083 117 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 MORN2Q502X0 79 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 ZNF319Q9P2F9 582 aa12.41□□□□□ -0.42
CHD4-201ENST00000357008 EPOPA6NHQ4 379 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 PAX1P15863 534 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 TMPRSS3P57727 454 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 FNDC4Q9H6D8 234 aaPredicted RBP12.4□□□□□ -0.42
CHD4-201ENST00000357008 A0A0G2JLM5 398 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 A0A0G2JMM0 328 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 A0A1W2PPB8 328 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 A0A1W2PRS3 328 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 KIR3DP1A8MWS1 328 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 PPBPP02775 128 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 REG4Q9BYZ8 158 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 IGLV3-12A0A075B6K2 115 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 IGLV3-32A0A0A0MS00 114 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 TCRBV4S1A1TA0A5B7 111 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 FAM27E3Q08E93 113 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 ORAOV1Q8WV07 137 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 PVRIGQ6DKI7 326 aa12.4□□□□□ -0.42
CHD4-201ENST00000357008 NXT2Q9NPJ8 142 aaKnown RBP12.4□□□□□ -0.42
CHD4-201ENST00000357008 SRSF7Q16629 238 aaKnown RBP eCLIP12.4□□□□□ -0.432e-7■□□□□ 8.9
CHD4-201ENST00000357008 VSIRQ9H7M9 311 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 ST20Q9HBF5 79 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 DEPPQ9NTK1 212 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 DPM2O94777 84 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 MRPL14Q6P1L8 145 aaKnown RBP12.39□□□□□ -0.43
CHD4-201ENST00000357008 ATP5L2Q7Z4Y8 100 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 TSKUQ8WUA8 353 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 CENPVQ7Z7K6 275 aaPredicted RBP12.39□□□□□ -0.43
CHD4-201ENST00000357008 COQ2Q96H96 371 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 IGLV3-19P01714 112 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 GFI1BQ5VTD9 330 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 SEC11AP67812 179 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 FOXL1Q12952 345 aa12.39□□□□□ -0.43
CHD4-201ENST00000357008 ATP5J2P56134 94 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 NUTF2P61970 127 aaKnown RBP12.38□□□□□ -0.43
CHD4-201ENST00000357008 PRCDQ00LT1 54 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 THSD7AQ9UPZ6 1657 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 CELA3BP08861 270 aa12.38□□□□□ -0.43
CHD4-201ENST00000357008 PYYP10082 97 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms