RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 MRPL27Q9P0M9 148 aaKnown RBP13.8□□□□□ -0.2
CLN3-202ENST00000355477 C14orf166Q9Y224 244 aaKnown RBP13.8□□□□□ -0.2
CLN3-202ENST00000355477 OR11H12B2RN74 326 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 ATG12O94817 140 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 CDS2O95674 445 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 MT-CO2P00403 227 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 ETV6P41212 452 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 ERHP84090 104 aaKnown RBP13.79□□□□□ -0.2
CLN3-202ENST00000355477 SURF2Q15527 256 aaPredicted RBP13.79□□□□□ -0.2
CLN3-202ENST00000355477 LINC00322Q6ZN03 302 aaPredicted RBP13.79□□□□□ -0.2
CLN3-202ENST00000355477 MARC2Q969Z3 335 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 NAA60Q9H7X0 242 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 CSMD3Q7Z407 3707 aa13.79□□□□□ -0.2
CLN3-202ENST00000355477 TEX13DA0A0J9YY54 714 aaPredicted RBP13.78□□□□□ -0.2
CLN3-202ENST00000355477 RBMY1BA6NDE4 496 aaKnown RBP13.78□□□□□ -0.2
CLN3-202ENST00000355477 RBMY1EA6NEQ0 496 aaKnown RBP13.78□□□□□ -0.2
CLN3-202ENST00000355477 NDUFA4O00483 81 aa13.78□□□□□ -0.2
CLN3-202ENST00000355477 B3GALNT1O75752 331 aa13.78□□□□□ -0.2
CLN3-202ENST00000355477 IFNA17P01571 189 aa13.78□□□□□ -0.2
CLN3-202ENST00000355477 RBMY1DP0C7P1 496 aaKnown RBP13.78□□□□□ -0.2
CLN3-202ENST00000355477 SELENOHQ8IZQ5 122 aaKnown RBP13.78□□□□□ -0.2
CLN3-202ENST00000355477 RRNAD1Q96FB5 475 aaKnown RBP13.78□□□□□ -0.2
CLN3-202ENST00000355477 PRRT1Q99946 306 aa13.78□□□□□ -0.2
CLN3-202ENST00000355477 CRYM-AS1A6NIL9 109 aa13.77□□□□□ -0.21
CLN3-202ENST00000355477 INS-IGF2F8WCM5 200 aa13.77□□□□□ -0.21
CLN3-202ENST00000355477 ZNF207O43670 478 aaKnown RBP13.77□□□□□ -0.21
CLN3-202ENST00000355477 FCGR2BP31994 310 aaPredicted RBP13.77□□□□□ -0.21
CLN3-202ENST00000355477 MFAP4P55083 255 aa13.77□□□□□ -0.21
CLN3-202ENST00000355477 SLC35G3Q8N808 338 aa13.77□□□□□ -0.21
CLN3-202ENST00000355477 PINX1Q96BK5 328 aaKnown RBP13.77□□□□□ -0.21
CLN3-202ENST00000355477 C20orf24Q9BUV8 137 aa13.77□□□□□ -0.21
CLN3-202ENST00000355477 DAZ1Q9NQZ3 744 aaKnown RBP13.77□□□□□ -0.21
CLN3-202ENST00000355477 TENM2Q9NT68 2774 aa13.77□□□□□ -0.21
CLN3-202ENST00000355477 CCDC160A6NGH7 325 aa13.76□□□□□ -0.21
CLN3-202ENST00000355477 OR52B4Q8NGK2 314 aa13.76□□□□□ -0.21
CLN3-202ENST00000355477 RNASE11Q8TAA1 199 aaKnown RBP13.76□□□□□ -0.21
CLN3-202ENST00000355477 TMEM230Q96A57 120 aa13.76□□□□□ -0.21
CLN3-202ENST00000355477 TXN2Q99757 166 aa13.76□□□□□ -0.21
CLN3-202ENST00000355477 RBM38Q9H0Z9 239 aaKnown RBP13.76□□□□□ -0.21
CLN3-202ENST00000355477 SRD5A3Q9H8P0 318 aa13.76□□□□□ -0.21
CLN3-202ENST00000355477 TRAV25A0A0B4J276 109 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 K7EMT4 169 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 NUPL2O15504 423 aaKnown RBP13.75□□□□□ -0.21
CLN3-202ENST00000355477 RNASE2P10153 161 aaKnown RBP13.75□□□□□ -0.21
CLN3-202ENST00000355477 SNCAP37840 140 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 DHODHQ02127 395 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 PVRIGQ6DKI7 326 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 RBPMS2Q6ZRY4 209 aaKnown RBP13.75□□□□□ -0.21
CLN3-202ENST00000355477 SLC16A13Q7RTY0 426 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 RBPMSQ93062 196 aaKnown RBP13.75□□□□□ -0.21
CLN3-202ENST00000355477 GPR146Q96CH1 333 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 CITED4Q96RK1 184 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 SPATA25Q9BR10 227 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 PDCD10Q9BUL8 212 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 MCUBQ9NWR8 336 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 GAR1Q9NY12 217 aaKnown RBP13.75□□□□□ -0.21
CLN3-202ENST00000355477 PRR13Q9NZ81 148 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 SCP2D1Q9UJQ7 156 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 V9GYH0 126 aa13.75□□□□□ -0.21
CLN3-202ENST00000355477 C3orf84H3BNL1 204 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 HOXA1P49639 335 aaPredicted RBP13.74□□□□□ -0.21
CLN3-202ENST00000355477 AARDQ4LEZ3 155 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 TMEM268Q5VZI3 342 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 FAM219AQ8IW50 185 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 MUC7Q8TAX7 377 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 TRIM63Q969Q1 353 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 RETNQ9HD89 108 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.74□□□□□ -0.21
CLN3-202ENST00000355477 TMEM56-RWDD3S4R434 201 aa13.74□□□□□ -0.21
CLN3-202ENST00000355477 C15orf62A8K5M9 175 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 GNG7O60262 68 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 SPCS3P61009 180 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 RELQ04864 619 aaPredicted RBP13.73□□□□□ -0.21
CLN3-202ENST00000355477 KLF9Q13886 244 aaPredicted RBP13.73□□□□□ -0.21
CLN3-202ENST00000355477 TMEM187Q14656 261 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 ZNF79Q15937 498 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 MLANAQ16655 118 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 PYDC2Q56P42 97 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 HIPK2Q9H2X6 1198 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 EDA2RQ9HAV5 297 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 CACNG5Q9UF02 275 aa13.73□□□□□ -0.21
CLN3-202ENST00000355477 TSPAN4O14817 238 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 YIF1AO95070 293 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 SUPT4H1P63272 117 aaKnown RBP13.72□□□□□ -0.21
CLN3-202ENST00000355477 BSXQ3C1V8 233 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 ANKRD55Q3KP44 614 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 GALNT14Q96FL9 552 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 OR10C1Q96KK4 312 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 FNDC4Q9H6D8 234 aaPredicted RBP13.72□□□□□ -0.21
CLN3-202ENST00000355477 ENY2Q9NPA8 101 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 MRPL36Q9P0J6 103 aaKnown RBP13.72□□□□□ -0.21
CLN3-202ENST00000355477 SMPXQ9UHP9 88 aa13.72□□□□□ -0.21
CLN3-202ENST00000355477 IGHV3-49A0A0A0MS15 119 aa13.71□□□□□ -0.21
CLN3-202ENST00000355477 AKR1C4P17516 323 aa13.71□□□□□ -0.21
CLN3-202ENST00000355477 SUB1P53999 127 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLN3-202ENST00000355477 CCDC190Q86UF4 302 aa13.71□□□□□ -0.21
CLN3-202ENST00000355477 DUSP18Q8NEJ0 188 aa13.71□□□□□ -0.21
CLN3-202ENST00000355477 OR52E5Q8NH55 327 aa13.71□□□□□ -0.21
CLN3-202ENST00000355477 SCGB3A2Q96PL1 93 aa13.71□□□□□ -0.21
CLN3-202ENST00000355477 KCNIP3Q9Y2W7 256 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms