RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 OCC1Q8TAD7 63 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 RAB1CQ92928 201 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 UHRF2Q96PU4 802 aa8.38□□□□□ -1.07
LIMA1-201ENST00000341247 TRBV23-1A0A0A0MS06 115 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 A0A1W2PRD5 423 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 A0A1W2PRF3 423 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 A0A1W2PRM7 423 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 ZNF320A2RRD8 509 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 SLC17A3O00476 420 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 ERHP84090 104 aaKnown RBP8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OR5I1Q13606 314 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OR5AN1Q8NGI8 311 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OR4C13Q8NGP0 309 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OR1L8Q8NGR8 309 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OR2T10Q8NGZ9 312 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OSR1Q8TAX0 266 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-201ENST00000341247 VKORC1Q9BQB6 163 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 GSN-AS1Q9NRJ2 163 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 BET1LQ9NYM9 111 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 SIAH2O43255 324 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 IGHV1-8P0DP01 117 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 RPL29P47914 159 aaKnown RBP8.37□□□□□ -1.07
LIMA1-201ENST00000341247 CASP6P55212 293 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 NPIPB3Q92617 1050 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 SLC45A2Q9UMX9 530 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 MDFIC2A0A1B0GVS7 189 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 CRYBB3P26998 211 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 PRR20EP86478 221 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 PRR20CP86479 221 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 PRR20DP86480 221 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 PRR20BP86481 221 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 PRR20AP86496 221 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 TMEM144Q7Z5S9 345 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 OR5B3Q8NH48 314 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 SGMS2Q8NHU3 365 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 TCEAL7Q9BRU2 100 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 ZNF257Q9Y2Q1 563 aa8.37□□□□□ -1.07
LIMA1-201ENST00000341247 SPINK4O60575 86 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 ZNF90Q03938 601 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 HLA-DRB5Q30154 266 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 HIST3H2BBQ8N257 126 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 FNDC4Q9H6D8 234 aaPredicted RBP8.36□□□□□ -1.07
LIMA1-201ENST00000341247 NDUFA4L2Q9NRX3 87 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 FKBP11Q9NYL4 201 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 MRPL36Q9P0J6 103 aaKnown RBP8.36□□□□□ -1.07
LIMA1-201ENST00000341247 WASHC3Q9Y3C0 194 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 CD69Q07108 199 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 TMEM155Q4W5P6 130 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 RUSC1-AS1Q66K80 236 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 MISP3Q96FF7 219 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 SRD5A3Q9H8P0 318 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 FLNCQ14315 2725 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 A0A1B0GUS0 222 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 SUMO1P63165 101 aaKnown RBP8.36□□□□□ -1.07
LIMA1-201ENST00000341247 TNXAQ16473 311 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 ANAPC16Q96DE5 110 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 SFRP2Q96HF1 295 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 SLC35E1Q96K37 410 aa8.36□□□□□ -1.07
LIMA1-201ENST00000341247 XKRY2A2RUG3 117 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 CGB1A6NKQ9 187 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 MOSP00540 346 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 PRB4P10163 310 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-201ENST00000341247 CD24P25063 80 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 C2orf83Q53S99 150 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 NHLRC2Q8NBF2 726 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 TMEM186Q96B77 213 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 B9A039 149 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 TNFRSF13BO14836 293 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-201ENST00000341247 USF1P22415 310 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-201ENST00000341247 IL3RAP26951 378 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 TMEM177Q53S58 311 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 C11orf42Q8N5U0 333 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 TMEM133Q9H2Q1 129 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 GSX1Q9H4S2 264 aaPredicted RBP8.35□□□□□ -1.07
LIMA1-201ENST00000341247 ONECUT1Q9UBC0 465 aa8.35□□□□□ -1.07
LIMA1-201ENST00000341247 VENTXO95231 258 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 MT-CO2P00403 227 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 IGLV2-23P01705 113 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 OR5G3P0C626 314 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 PYYP10082 97 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 PPOXP50336 477 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 KCNIP4Q6PIL6 250 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 ZNF503Q96F45 646 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 A0A1W2PPI3 338 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 K7EN84 100 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 DLL1O00548 723 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 PHOX2AO14813 284 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 AREGP15514 252 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 DLX6P56179 175 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 SLC35B1P78383 322 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 ST6GALNAC6Q969X2 333 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 HIVEP3Q5T1R4 2406 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 IGHV2-26A0A0B4J1V2 119 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 VMA21Q3ZAQ7 101 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 PDPNQ86YL7 162 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 SGK494Q96LW2 274 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 LINC00479Q96M42 142 aa8.34□□□□□ -1.07
LIMA1-201ENST00000341247 H3BTX0 84 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 FRMD6-AS1P0C7T7 363 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 ORM2P19652 201 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 152.4 ms