RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 OR4D10Q8NGI6 311 aa13.21□□□□□ -0.29
HDDC3-201ENST00000330334 COPZ2Q9P299 210 aa13.21□□□□□ -0.29
HDDC3-201ENST00000330334 RABL2AQ9UBK7 228 aaPredicted RBP13.21□□□□□ -0.29
HDDC3-201ENST00000330334 RABL2BQ9UNT1 228 aa13.21□□□□□ -0.29
HDDC3-201ENST00000330334 LYSTQ99698 3801 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 OR4C46A6NHA9 309 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 CTSDP07339 412 aaPredicted RBP13.2□□□□□ -0.3
HDDC3-201ENST00000330334 UCP1P25874 307 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 MEF2DQ14814 521 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 OR13C8Q8NGS7 320 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 OVOL2Q9BRP0 275 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 TP53TG1Q9Y2A0 90 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 DNAH1Q9P2D7 4330 aa13.2□□□□□ -0.3
HDDC3-201ENST00000330334 IGHV7-4-1A0A0J9YVY3 117 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 UBE2CO00762 179 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 CTDSP2O14595 271 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 CTDSPLO15194 276 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 RGS5O15539 181 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 SNCAP37840 140 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 NPBWR1P48145 328 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 AKR1C2P52895 323 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 SUB1P53999 127 aaKnown RBP eCLIP13.19□□□□□ -0.3
HDDC3-201ENST00000330334 APOC4P55056 127 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 CMC4P56277 68 aaPredicted RBP13.19□□□□□ -0.3
HDDC3-201ENST00000330334 SURF2Q15527 256 aaPredicted RBP13.19□□□□□ -0.3
HDDC3-201ENST00000330334 IZUMO4Q1ZYL8 232 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 Q6ZWC4 215 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 WFDC3Q8IUB2 231 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 TMEM116Q8NCL8 245 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 BCL7BQ9BQE9 202 aa13.19□□□□□ -0.3
HDDC3-201ENST00000330334 TRAV14DV4A0A0A6YYC5 116 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 KIR2DL5BA0A0G2JN68 375 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 KIR2DL5BA0A0G2JPC4 375 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 CHEK1O14757 476 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 ST8SIA3O43173 380 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 GNG7O60262 68 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 CDS2O95674 445 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 IFNA17P01571 189 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 CD5P06127 495 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 SPCS2Q15005 226 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 TRIM16LQ309B1 348 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 ODF3L2Q3SX64 289 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 SCGB2B2Q4G0G5 96 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 AARDQ4LEZ3 155 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 FAM219AQ8IW50 185 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 KIR2DL5AQ8N109 375 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 SLC35G3Q8N808 338 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 DUSP18Q8NEJ0 188 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 KIR2DL5BQ8NHK3 375 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 RAB2BQ8WUD1 216 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 SMIM4Q8WVI0 70 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 RRNAD1Q96FB5 475 aaKnown RBP13.18□□□□□ -0.3
HDDC3-201ENST00000330334 PDCD10Q9BUL8 212 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 RHPN1-AS1Q9BWJ2 59 aa13.18□□□□□ -0.3
HDDC3-201ENST00000330334 IGHV3OR16-8A0A075B7F1 116 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 CORTO00230 105 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 ZNF207O43670 478 aaKnown RBP13.17□□□□□ -0.3
HDDC3-201ENST00000330334 YIF1AO95070 293 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 PPP5CP53041 499 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 TMBIM6P55061 237 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 SP6Q3SY56 376 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 MARCH1Q8TCQ1 289 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 PINX1Q96BK5 328 aaKnown RBP13.17□□□□□ -0.3
HDDC3-201ENST00000330334 RNF2Q99496 336 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 TMEM222Q9H0R3 208 aa13.17□□□□□ -0.3
HDDC3-201ENST00000330334 RPL5P46777 297 aaKnown RBP13.16□□□□□ -0.3
HDDC3-201ENST00000330334 FAM90A2PQ658T7 463 aa13.16□□□□□ -0.3
HDDC3-201ENST00000330334 OR52E5Q8NH55 327 aa13.16□□□□□ -0.3
HDDC3-201ENST00000330334 DYNC2LI1Q8TCX1 351 aa13.16□□□□□ -0.3
HDDC3-201ENST00000330334 GLYATL2Q8WU03 294 aa13.16□□□□□ -0.3
HDDC3-201ENST00000330334 GINS3Q9BRX5 216 aa13.16□□□□□ -0.3
HDDC3-201ENST00000330334 RTBDNQ9BSG5 229 aaPredicted RBP13.16□□□□□ -0.3
HDDC3-201ENST00000330334 CCDC59Q9P031 241 aaKnown RBP13.16□□□□□ -0.3
HDDC3-201ENST00000330334 UBQLN2Q9UHD9 624 aa13.16□□□□□ -0.3
HDDC3-201ENST00000330334 DISC1C4P0D8 188 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 TMEM50AO95807 157 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 IGHV3-48P01763 117 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 RNASE2P10153 161 aaKnown RBP13.15□□□□□ -0.3
HDDC3-201ENST00000330334 BMI1P35226 326 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 ETV6P41212 452 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 BSXQ3C1V8 233 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 SPINK9Q5DT21 86 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 TOMM20LQ6UXN7 152 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 CLVS1Q8IUQ0 354 aaPredicted RBP13.15□□□□□ -0.3
HDDC3-201ENST00000330334 GALNT14Q96FL9 552 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 DIRAS2Q96HU8 199 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.15□□□□□ -0.3
HDDC3-201ENST00000330334 GPR132Q9UNW8 380 aa13.15□□□□□ -0.3
HDDC3-201ENST00000330334 C14orf166Q9Y224 244 aaKnown RBP13.15□□□□□ -0.3
HDDC3-201ENST00000330334 A0A0G2JRQ6 117 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 TEX13DA0A0J9YY54 714 aaPredicted RBP13.14□□□□□ -0.31
HDDC3-201ENST00000330334 SPRY2O43597 315 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 AKAIN1P0CW23 69 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 SPCS3P61009 180 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 DHODHQ02127 395 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 ZNF600Q6ZNG1 722 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 Q6ZRM9 215 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 STPG3Q8N7X2 389 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 RBPMSQ93062 196 aaKnown RBP13.14□□□□□ -0.31
HDDC3-201ENST00000330334 PRRT1Q99946 306 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms