RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 WDR73Q6P4I2 378 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 TOMM20LQ6UXN7 152 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 Q6ZS92 163 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 Q6ZWC4 215 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 NUP37Q8NFH4 326 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 CACNG8Q8WXS5 425 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 MRPL32Q9BYC8 188 aaKnown RBP15.22■□□□□ 0.03
CPSF3-201ENST00000238112 Q0VG73 95 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 FXYD3Q14802 87 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 ST6GALNAC3Q8NDV1 305 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 HSPB9Q9BQS6 159 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 SAMD10Q9BYL1 202 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 NDUFA4L2Q9NRX3 87 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 CBLN4Q9NTU7 201 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 NAT8BQ9UHF3 227 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 ICE1Q9Y2F5 2266 aa15.22■□□□□ 0.03
CPSF3-201ENST00000238112 YLPM1P49750 1951 aaKnown RBP15.21■□□□□ 0.03
CPSF3-201ENST00000238112 EREGO14944 169 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 SPINK4O60575 86 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 CRYABP02511 175 aaKnown RBP15.21■□□□□ 0.03
CPSF3-201ENST00000238112 MT-ND6P03923 174 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 MGST1P10620 155 aaKnown RBP15.21■□□□□ 0.03
CPSF3-201ENST00000238112 CEACAM8P31997 349 aaPredicted RBP15.21■□□□□ 0.03
CPSF3-201ENST00000238112 CX3CL1P78423 397 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 MEF2CQ06413 473 aaPredicted RBP15.21■□□□□ 0.03
CPSF3-201ENST00000238112 TMEM108Q6UXF1 575 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 DMRTC2Q8IXT2 367 aaPredicted RBP15.21■□□□□ 0.03
CPSF3-201ENST00000238112 OR5AU1Q8NGC0 362 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 RNF2Q99496 336 aa15.21■□□□□ 0.03
CPSF3-201ENST00000238112 H0YJW9 148 aa15.21■□□□□ 0.02
CPSF3-201ENST00000238112 ISLRO14498 428 aa15.21■□□□□ 0.02
CPSF3-201ENST00000238112 CD33P20138 364 aa15.21■□□□□ 0.02
CPSF3-201ENST00000238112 FLYWCH2Q96CP2 140 aaKnown RBP15.21■□□□□ 0.02
CPSF3-201ENST00000238112 ZNF714Q96N38 554 aa15.21■□□□□ 0.02
CPSF3-201ENST00000238112 TNCP24821 2201 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 CCL3L1P16619 93 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 REG1BP48304 166 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 PPOXP50336 477 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 UBE2L3P68036 154 aaKnown RBP15.2■□□□□ 0.02
CPSF3-201ENST00000238112 IBA57Q5T440 356 aaKnown RBP15.2■□□□□ 0.02
CPSF3-201ENST00000238112 TGIF2LXQ8IUE1 241 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 OR2T6Q8NHC8 308 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 A0A1W2PN81 502 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 USF1P22415 310 aaPredicted RBP15.2■□□□□ 0.02
CPSF3-201ENST00000238112 TCL1AP56279 114 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 COX19Q49B96 90 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 OR5AN1Q8NGI8 311 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 DNAJC4Q9NNZ3 241 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 SERTAD4Q9NUC0 356 aa15.2■□□□□ 0.02
CPSF3-201ENST00000238112 CACNA1HO95180 2353 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 F2Z2F3 143 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 TMEM177Q53S58 311 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 OR10X1Q8NGY0 326 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 SLC25A2Q9BXI2 301 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 DYSFO75923 2080 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 PLCE1Q9P212 2302 aa15.19■□□□□ 0.02
CPSF3-201ENST00000238112 M0R143 59 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 SLC35B1P78383 322 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 VSTM2AQ8TAG5 236 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 FAM57AQ8TBR7 257 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 IGF2BP2-AS1Q96M15 143 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 TRAV5A0A0B4J249 113 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 C17orf100A8MU93 164 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 COX7A2P2O60397 106 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 IGLV2-8P01709 118 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 OR4C13Q8NGP0 309 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 FAM167A-AS1Q96KT0 104 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 SNHG12Q9BXW3 62 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 GNB4Q9HAV0 340 aa15.18■□□□□ 0.02
CPSF3-201ENST00000238112 INS-IGF2F8WCM5 200 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 NUTF2P61970 127 aaKnown RBP15.17■□□□□ 0.02
CPSF3-201ENST00000238112 TPTE2P1Q5T6R2 138 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 MORN5Q5VZ52 161 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 TMEM200BQ69YZ2 307 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 TMEM136Q6ZRR5 245 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 WFDC8Q8IUA0 241 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 SIGLECL1Q8N7X8 197 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 OR4A5Q8NH83 315 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 H1FXQ92522 213 aaKnown RBP15.17■□□□□ 0.02
CPSF3-201ENST00000238112 PSMB11A5LHX3 300 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 BRS3P32247 399 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 TEX43Q6ZNM6 134 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 ZCCHC24Q8N2G6 241 aaKnown RBP15.17■□□□□ 0.02
CPSF3-201ENST00000238112 RBMXL3Q8N7X1 1067 aaKnown RBP15.17■□□□□ 0.02
CPSF3-201ENST00000238112 TMEM167AQ8TBQ9 72 aa15.17■□□□□ 0.02
CPSF3-201ENST00000238112 EP300Q09472 2414 aaPredicted RBP15.17■□□□□ 0.02
CPSF3-201ENST00000238112 E7EUB6 86 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 AMY1AP04745 511 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 SUB1P53999 127 aaKnown RBP eCLIP15.16■□□□□ 0.024e-10■■■□□ 14.7
CPSF3-201ENST00000238112 ADIPOQQ15848 244 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 PDPNQ86YL7 162 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 OR1L4Q8NGR5 311 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 ZNF430Q9H8G1 570 aaPredicted RBP15.16■□□□□ 0.02
CPSF3-201ENST00000238112 SAP30LQ9HAJ7 183 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 CDC42EP3Q9UKI2 254 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 BOD1L1Q8NFC6 3051 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 SMIM27A0A1W2PRY6 76 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 CDKN1AP38936 164 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 BPIFB3P59826 476 aa15.16■□□□□ 0.02
CPSF3-201ENST00000238112 SSBP2P81877 361 aaPredicted RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms