RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GGTLC1Q9BX51 225 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 MTCH1Q9NZJ7 389 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 HILPDAQ9Y5L2 63 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 V9GYV3 84 aa8.51□□□□□ -1.05
VPS39-214ENST00000614932 LAMA5O15230 3695 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 C5orf63A6NC05 138 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 K7EN84 100 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 ZNHIT1O43257 154 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 NEURL1O76050 574 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 CER1O95813 267 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 SP9P0CG40 484 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 CFHR2P36980 270 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 TIMM23BQ5SRD1 257 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 WDR5BQ86VZ2 330 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 ZNF611Q8N823 705 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 PP6455Q8WZ26 134 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 ARRDC1-AS1Q9H2J1 176 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 TNFRSF19Q9NS68 423 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 MBNL3Q9NUK0 354 aaKnown RBP8.5□□□□□ -1.05
VPS39-214ENST00000614932 ALKBH4Q9NXW9 302 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 COL5A1P20908 1838 aaPredicted RBP8.5□□□□□ -1.05
VPS39-214ENST00000614932 IGHV1-45A0A0A0MS14 117 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 COX6A1P12074 109 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 ZXDAP98168 799 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 WFDC2Q14508 124 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 KISS1Q15726 138 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 TXNDC17Q9BRA2 123 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 C1QTNF4Q9BXJ3 329 aa8.5□□□□□ -1.05
VPS39-214ENST00000614932 PPYP01298 95 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 KLF5Q13887 457 aaPredicted RBP8.49□□□□□ -1.05
VPS39-214ENST00000614932 MOB1BQ7L9L4 216 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 YRDCQ86U90 279 aaKnown RBP8.49□□□□□ -1.05
VPS39-214ENST00000614932 SH2D2AQ9NP31 389 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 IGKV1-9A0A0C4DH69 117 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 SYNGR2O43760 224 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 IGHMP01871 453 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 IAPPP10997 89 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 TMPRSS3P57727 454 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 GRB2P62993 217 aaKnown RBP8.49□□□□□ -1.05
VPS39-214ENST00000614932 SLC38A11Q08AI6 406 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 PDCD1Q15116 288 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 GCSAMQ8N6F7 178 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 RDH5Q92781 318 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 EXPH5Q8NEV8 1989 aa8.49□□□□□ -1.05
VPS39-214ENST00000614932 LRRC30A6NM36 301 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 TNFSF11O14788 317 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SNAI2O43623 268 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 OR9G9P0C7N8 305 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 CEACAM16Q2WEN9 425 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 RPS19BP1Q86WX3 136 aaKnown RBP8.48□□□□□ -1.05
VPS39-214ENST00000614932 SAP30LQ9HAJ7 183 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 TECRQ9NZ01 308 aaKnown RBP8.48□□□□□ -1.05
VPS39-214ENST00000614932 hADV38S2A0JD32 116 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 C19orf67A6NJJ6 358 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 CD300LBA8K4G0 201 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SYNGR1O43759 233 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SLC35B1P78383 322 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 IL11RAQ14626 422 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 OR4A16Q8NH70 328 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 ZNF837Q96EG3 531 aaPredicted RBP8.48□□□□□ -1.05
VPS39-214ENST00000614932 OR2W1Q9Y3N9 320 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 LINC00312Q9Y6C7 94 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 LY96Q9Y6Y9 160 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 TTC28Q96AY4 2481 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 ZFHX4Q86UP3 3567 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SCO2A0A1W2PP80 73 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 E9PLN8 166 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 F5H5K5 113 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 NTN3O00634 580 aaPredicted RBP8.48□□□□□ -1.05
VPS39-214ENST00000614932 IGHG1P01857 330 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 FOLR3P41439 243 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 ETDBQ3ZM63 59 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 C5orf47Q569G3 176 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 FAM120AOSQ5T036 256 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SPACA3Q8IXA5 215 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 Q96M66 194 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SIGLEC8Q9NYZ4 499 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 R4GN57 208 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 FAM186AA6NE01 2351 aa8.48□□□□□ -1.05
VPS39-214ENST00000614932 SHANK1Q9Y566 2161 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 A4D1N5 150 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 M0QXV9 152 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 MT-ATP8P03928 68 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 PATE4P0C8F1 98 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 MGST1P10620 155 aaKnown RBP8.47□□□□□ -1.05
VPS39-214ENST00000614932 SSR4P51571 173 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 SUMO3P55854 103 aaPredicted RBP8.47□□□□□ -1.05
VPS39-214ENST00000614932 CRIP3Q6Q6R5 217 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 SH2D6Q7Z4S9 175 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 IMMP1LQ96LU5 166 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 PROK2Q9HC23 129 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 RABAC1Q9UI14 185 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 VPREB3Q9UKI3 123 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 A0A0G2JRQ6 117 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 DHHO43323 396 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 DKK1O94907 266 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 RFPL3SP0C7P2 107 aa8.47□□□□□ -1.05
VPS39-214ENST00000614932 FCGR2BP31994 310 aaPredicted RBP8.47□□□□□ -1.05
VPS39-214ENST00000614932 ZNF121P58317 390 aaPredicted RBP8.47□□□□□ -1.05
VPS39-214ENST00000614932 GNG3P63215 75 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms