RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 ACTL6BO94805 426 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 OR2A4O95047 310 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 BRI3O95415 125 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 H2AFB2P0C5Z0 115 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 ANXA7P20073 488 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 UCP1P25874 307 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 G6PCP35575 357 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 UBE2MP61081 183 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 C4orf46Q504U0 113 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 LCN12Q6JVE5 192 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 ZNF343Q6P1L6 599 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 PLET1Q6UQ28 207 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 NRARPQ7Z6K4 114 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 GALNT14Q96FL9 552 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 OR2A7Q96R45 310 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 TMEM222Q9H0R3 208 aa12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 PEF1Q9UBV8 284 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-215ENST00000597649 PIGBOS1A0A0B4J2F0 54 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 MARCH11A6NNE9 402 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 ZNF785A8K8V0 405 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 CNIH1O95406 144 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 SFT2D2O95562 160 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 CRYGBP07316 175 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 AKR1C2P52895 323 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 SRPXP78539 464 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 PPP1R1AQ13522 171 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 H2BFWTQ7Z2G1 175 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 LGI3Q8N145 548 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 DEFB125Q8N687 156 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 OR4A5Q8NH83 315 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 GLYATL2Q8WU03 294 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 WFDC10AQ9H1F0 79 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 TMEM140Q9NV12 185 aa12.42□□□□□ -0.42
SHKBP1-215ENST00000597649 SNAPC5O75971 98 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 KBTBD11O94819 623 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 HLA-AP01891 365 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 CD7P09564 240 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 OR4E1P0C645 316 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 SUPT4H1P63272 117 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 TMEM187Q14656 261 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 POU2AF1Q16633 256 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 TMEM268Q5VZI3 342 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 OR4A47Q6IF82 309 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 MMD2Q8IY49 270 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 PUSL1Q8N0Z8 303 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 DUSP18Q8NEJ0 188 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 RBPMSQ93062 196 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 RRNAD1Q96FB5 475 aaKnown RBP12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 NEURL2Q9BR09 285 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 BET1LQ9NYM9 111 aa12.41□□□□□ -0.42
SHKBP1-215ENST00000597649 CDS2O95674 445 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 IGKV1-39P01597 117 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 IGKV1D-39P04432 117 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 CD81P60033 236 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 TNXAQ16473 311 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 PRSS8Q16651 343 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 MRGPRG-AS1Q2M3A8 158 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 CD300EQ496F6 205 aaPredicted RBP12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 LYG2Q86SG7 212 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 TMEM167AQ8TBQ9 72 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 LINC00476Q8WZB0 136 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 IL22RA2Q969J5 263 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 PRR13Q9NZ81 148 aa12.4□□□□□ -0.42
SHKBP1-215ENST00000597649 C9orf170A2RU37 121 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 UPK2O00526 184 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 PTTG1O95997 202 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 TATDN3Q17R31 274 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 RPEL1Q2QD12 228 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 SELENOHQ8IZQ5 122 aaKnown RBP12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 OR4A16Q8NH70 328 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 COQ8AQ8NI60 647 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 SEC22AQ96IW7 307 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 TMEM56Q96MV1 263 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 ZNF430Q9H8G1 570 aaPredicted RBP12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 TMEM56-RWDD3S4R434 201 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 VPS13DQ5THJ4 4388 aa12.39□□□□□ -0.43
SHKBP1-215ENST00000597649 INMT-MINDY4F8WBC2 141 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 APELAP0DMC3 54 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 EDN2P20800 178 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 MAS1LP35410 378 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 RPL8P62917 257 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 DHRS2Q13268 280 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 RGS21Q2M5E4 152 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 OR2K2Q8NGT1 345 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 USMG5Q96IX5 58 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 PHB2Q99623 299 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 COMMD5Q9GZQ3 224 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 SRD5A3Q9H8P0 318 aa12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 GPN1Q9HCN4 374 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-215ENST00000597649 KIAA1109Q2LD37 5005 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 BMPR1BO00238 502 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 DHFRP00374 187 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 IGKV1-5P01602 117 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 HLA-GP17693 338 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 DEFB114Q30KQ6 69 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 FAM219AQ8IW50 185 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 CADM3Q8N126 398 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 SLC35G3Q8N808 338 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 LHFPL5Q8TAF8 219 aa12.37□□□□□ -0.43
SHKBP1-215ENST00000597649 TMEM68Q96MH6 324 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms