RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CLEC3BP05452 202 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 P0C879 139 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 NHLRC4P0CG21 123 aaPredicted RBP7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 EDN2P20800 178 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 TNFSF8P32971 234 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 ARL3P36405 182 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 ETV6P41212 452 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 PRR20EP86478 221 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 PRR20CP86479 221 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 PRR20DP86480 221 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 PRR20BP86481 221 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 PRR20AP86496 221 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 IL18Q14116 193 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 FAAP20Q6NZ36 180 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 OR13C8Q8NGS7 320 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 LSM10Q969L4 123 aaKnown RBP7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 CXorf58Q96LI9 332 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 ASCL2Q99929 193 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 C6orf62Q9GZU0 229 aaPredicted RBP7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 FKBP11Q9NYL4 201 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 PEMTQ9UBM1 199 aa7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 F11RQ9Y624 299 aaKnown RBP7.79□□□□□ -1.16
CCDC88C-206ENST00000553437 C3orf85A0A1B0GTC6 90 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 C2orf70A6NJV1 201 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 IGKV1-5P01602 117 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 CTSDP07339 412 aaPredicted RBP7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 MEF2DQ14814 521 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 SCGB2B2Q4G0G5 96 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 H2BFWTQ7Z2G1 175 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 SBSPONQ8IVN8 264 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 OR4C16Q8NGL9 310 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 ZFAND1Q8TCF1 268 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 MARCH1Q8TCQ1 289 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 VN1R17PQ8TDU5 208 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 RTBDNQ9BSG5 229 aaPredicted RBP7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 HINT2Q9BX68 163 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 KRTAP17-1Q9BYP8 105 aa7.78□□□□□ -1.16
CCDC88C-206ENST00000553437 A0A0B4J293 547 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 ANKRD20A5PA0PJZ0 165 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM213A2RRL7 107 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 FABP12A6NFH5 140 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 A8MZ25 164 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 F8W735 103 aaPredicted RBP7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 K7EIM0 57 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 PTTG1O95997 202 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 FRMD6-AS1P0C7T7 363 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 AKAIN1P0CW23 69 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 FOLR2P14207 255 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 UCP1P25874 307 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 GPR183P32249 361 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 DEFA1P59665 94 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 DEFA3P59666 94 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 HSPE1P61604 102 aaKnown RBP7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 IFITM3Q01628 133 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 IZUMO4Q1ZYL8 232 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 DEFB114Q30KQ6 69 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 SP6Q3SY56 376 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 CD300EQ496F6 205 aaPredicted RBP7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 SPANXN2Q5MJ10 180 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 LCN12Q6JVE5 192 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 SLC25A24Q6NUK1 477 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 Q8N402 240 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 OR2C3Q8N628 320 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 OR2K2Q8NGT1 345 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 OR4A16Q8NH70 328 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 TMEM56Q96MV1 263 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 CCDC32Q9BV29 185 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 C5orf66Q9H5L9 145 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 ZC4H2Q9NQZ6 224 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 C19orf73Q9NVV2 129 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 THYN1Q9P016 225 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 COPZ2Q9P299 210 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 GPR132Q9UNW8 380 aa7.77□□□□□ -1.17
CCDC88C-206ENST00000553437 A0A0G2JRQ6 117 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF785A8K8V0 405 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 A8MWP6 167 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 DISC1C4P0D8 188 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 TGOLN2O43493 480 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 IGHV4-30-4P0DP06 118 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 CBLN1P23435 193 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 PRCDQ00LT1 54 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 SURF2Q15527 256 aaPredicted RBP7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 FAM106AQ4KMX7 169 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 UNQ9165/PRO28630Q6UXU0 137 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 CCDC190Q86UF4 302 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 CCDC71LQ8N9Z2 235 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 OR51S1Q8NGJ8 323 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 OR1P1Q8NH06 330 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 SCARB1Q8WTV0 552 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 CACNG8Q8WXS5 425 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF414Q96IQ9 312 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 ATP6V0BQ99437 205 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 SLC2A8Q9NY64 477 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 U3KQK5 164 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 SORL1Q92673 2214 aa7.76□□□□□ -1.17
CCDC88C-206ENST00000553437 IGHV3-21A0A0B4J1V1 117 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 ZNF320A2RRD8 509 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 INS-IGF2F8WCM5 200 aa7.75□□□□□ -1.17
CCDC88C-206ENST00000553437 BOLA2-SMG1P6H3BVE0 249 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms