RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 DEFB129Q9H1M3 183 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 MAP1LC3AQ9H492 121 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PRORYQ9H606 182 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 ISG20L2Q9H9L3 353 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 CISHQ9NSE2 258 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 OR5V1Q9UGF6 321 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 YARS2Q9Y2Z4 477 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 LSM2Q9Y333 95 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 SOX21Q9Y651 276 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 MAST2Q6P0Q8 1798 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PAPPAQ13219 1627 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 ZNF106Q9H2Y7 1883 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 COL24A1Q17RW2 1714 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 NUP188Q5SRE5 1749 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 GLI3P10071 1580 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 IGHV1OR21-1A0A087WYE8 117 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TRBV9A0A0B4J1U6 114 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 IGHV7-81A0A0B4J1V7 117 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 IGHV3-35A0A0C4DH35 117 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR51F1A6NGY5 319 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR4C46A6NHA9 309 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TMEM212A6NML5 194 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 F5H5K5 113 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 H3BRM9 83 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 RER1O15258 196 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SYNGR1O43759 233 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TBL1XO60907 577 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 NPIPB7O75200 414 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 NDUFB6O95139 128 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 CYB5AP00167 134 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TNFP01375 233 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 HLA-DPB1P04440 258 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 HSPB1P04792 205 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 CXCL1P09341 107 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SCTP09683 121 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 CT62P0C5K7 136 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SPINK8P0C7L1 97 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 LIMS3P0CW19 117 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 LIMS4P0CW20 117 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 PGA4P0DJD7 388 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 PGA5P0DJD9 388 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ZNF728P0DKX0 622 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 PPIBP23284 216 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 RPL12P30050 165 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 G6PCP35575 357 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TNFSF9P41273 254 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR1E2P47887 323 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ZNF133P52736 654 aaPredicted RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 CRISP3P54108 245 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 DIO3P55073 304 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 FBXW4P57775 412 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 IGLV3-21P80748 117 aaPredicted RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 PAFAH1B3Q15102 231 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 PRR4Q16378 134 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 LRRC75BQ2VPJ9 315 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TCEAL5Q5H9L2 206 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 KLF17Q5JT82 389 aaPredicted RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 ACTL10Q5JWF8 245 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 AADACL3Q5VUY0 350 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SPATA31B1PQ5VZV4 182 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 HBMQ6B0K9 141 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 C11orf71Q6IPW1 123 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SFXN4Q6P4A7 337 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 LINC00336Q6ZUF6 198 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ASCL5Q7RTU5 278 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ZNF429Q86V71 674 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TEX29Q8N6K0 151 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ZNF525Q8N782 197 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR2M3Q8NG83 312 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR2K2Q8NGT1 345 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR6K6Q8NGW6 343 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ATP6V0E2Q8NHE4 81 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR51E1Q8TCB6 317 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ACER1Q8TDN7 264 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 RNF138Q8WVD3 245 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SMIM4Q8WVI0 70 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TWIST2Q8WVJ9 160 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 BAALCQ8WXS3 180 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR5P3Q8WZ94 311 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TVP23CQ96ET8 276 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 DYNLL2Q96FJ2 89 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 PGLYRP4Q96LB8 373 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 AP1S3Q96PC3 154 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 MCEEQ96PE7 176 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR4C12Q96R67 309 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 HIST1H4GQ99525 98 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SPIN2AQ99865 258 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SPIN2BQ9BPZ2 258 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 PMCHL2Q9BQD1 86 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 MRPL45Q9BRJ2 306 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 GGTLC1Q9BX51 225 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 TSSK6Q9BXA6 273 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 OR2D2Q9H210 308 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SH3BGRL3Q9H299 93 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 POMKQ9H5K3 350 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ST20Q9HBF5 79 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 HES4Q9HCC6 221 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 SH2D2AQ9NP31 389 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 PRTFDC1Q9NRG1 225 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 CA10Q9NS85 328 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms