RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 ERVK11-1P61568 191 aa11.1□□□□□ -0.63
GPC1-209ENST00000495100 RHOBP62745 196 aa11.1□□□□□ -0.63
GPC1-209ENST00000495100 LINC01560Q8TB33 94 aa11.1□□□□□ -0.63
GPC1-209ENST00000495100 FLYWCH2Q96CP2 140 aaKnown RBP11.1□□□□□ -0.63
GPC1-209ENST00000495100 SLC35E1Q96K37 410 aa11.1□□□□□ -0.63
GPC1-209ENST00000495100 PSMG3Q9BT73 122 aaPredicted RBP11.1□□□□□ -0.63
GPC1-209ENST00000495100 MRPL20Q9BYC9 149 aaKnown RBP11.1□□□□□ -0.63
GPC1-209ENST00000495100 ZMAT5Q9UDW3 170 aaKnown RBP11.1□□□□□ -0.63
GPC1-209ENST00000495100 HILPDAQ9Y5L2 63 aa11.1□□□□□ -0.63
GPC1-209ENST00000495100 TMSB15BA0A087X1C1 80 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 AHRRA9YTQ3 701 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 GNG5P63218 68 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 MBNL3Q9NUK0 354 aaKnown RBP11.09□□□□□ -0.63
GPC1-209ENST00000495100 FKBP11Q9NYL4 201 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 YTHDF2Q9Y5A9 579 aaKnown RBP11.09□□□□□ -0.63
GPC1-209ENST00000495100 RBP4P02753 201 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 FAM87AP0C7U9 286 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 FOLR2P14207 255 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 NUBP1P53384 320 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 C1orf229Q6ZS94 237 aaPredicted RBP11.09□□□□□ -0.63
GPC1-209ENST00000495100 TGIF2LXQ8IUE1 241 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 CMTM2Q8TAZ6 248 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 NABP2Q9BQ15 211 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 SSUH2Q9Y2M2 353 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 HIVEP3Q5T1R4 2406 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 PAX5Q02548 391 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 ATP6V1FQ16864 119 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 KRTAP27-1Q3LI81 207 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 SFRP2Q96HF1 295 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 SSBP4Q9BWG4 385 aaPredicted RBP11.09□□□□□ -0.63
GPC1-209ENST00000495100 LPAR2Q9HBW0 351 aa11.09□□□□□ -0.63
GPC1-209ENST00000495100 B4DEV8 164 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.08□□□□□ -0.64
GPC1-209ENST00000495100 SS18L1O75177 396 aaPredicted RBP11.08□□□□□ -0.64
GPC1-209ENST00000495100 ZNF253O75346 499 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 LINC00869P0C866 280 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 GCHFRP30047 84 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 FOXA3P55318 350 aaPredicted RBP11.08□□□□□ -0.64
GPC1-209ENST00000495100 OR5AU1Q8NGC0 362 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 OR2D3Q8NGH3 330 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 ABHD17AQ96GS6 310 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 WNT10AQ9GZT5 417 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 F2Z2F3 143 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 CENPWQ5EE01 88 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 DBX2Q6ZNG2 339 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 ZNF439Q8NDP4 499 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 MBD3L1Q8WWY6 194 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 GGTLC1Q9BX51 225 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 GP6Q9HCN6 339 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 ZNF355PQ9NSJ1 428 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 NUPR1O60356 82 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 RND2P52198 227 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 ERHP84090 104 aaKnown RBP11.08□□□□□ -0.64
GPC1-209ENST00000495100 MZT1Q08AG7 82 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 EFNB3Q15768 340 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 LINC01551Q86U37 167 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 Q8TCH9 128 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 C11orf1Q9H5F2 150 aa11.08□□□□□ -0.64
GPC1-209ENST00000495100 NKX6-3A6NJ46 265 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 PPIHO43447 177 aaKnown RBP11.07□□□□□ -0.64
GPC1-209ENST00000495100 GPX4P36969 197 aaPredicted RBP11.07□□□□□ -0.64
GPC1-209ENST00000495100 HSPE1P61604 102 aaKnown RBP11.07□□□□□ -0.64
GPC1-209ENST00000495100 BSPH1Q075Z2 132 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 TMEM108Q6UXF1 575 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 HES4Q9HCC6 221 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 ONECUT1Q9UBC0 465 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 ADMP35318 185 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 LYZP61626 148 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 ARSJQ5FYB0 599 aaPredicted RBP11.07□□□□□ -0.64
GPC1-209ENST00000495100 LRRK2Q5S007 2527 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 LYPD2Q6UXB3 125 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 Q6ZSR3 168 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 SMDT1Q9H4I9 107 aa11.07□□□□□ -0.64
GPC1-209ENST00000495100 C19orf67A6NJJ6 358 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 NDUFB3O43676 98 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 GFRA3O60609 400 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 TNFSF13O75888 250 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 CXorf1O96002 111 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 SLC25A5P05141 298 aaKnown RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 SAA1P0DJI8 122 aaPredicted RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 SIGLECL1Q8N7X8 197 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 SPRY4Q9C004 299 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 MRPL18Q9H0U6 180 aaKnown RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 PPIAL4AQ9Y536 164 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 SPENQ96T58 3664 aaKnown RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 CUBNO60494 3623 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 IGHV3OR16-13A0A075B7E8 117 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 IGHV3-74A0A0B4J1X5 117 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 SRRM4A7MD48 611 aaKnown RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 MKRN2OSH3BPM6 223 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 IGKV3-15P01624 115 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 IGHV3-23P01764 117 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 CEACAM1P13688 526 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 MFAP2P55001 183 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 UBE2G1P62253 170 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 RNASEKQ6P5S7 137 aaKnown RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 MCRIP2Q9BUT9 160 aaKnown RBP11.06□□□□□ -0.64
GPC1-209ENST00000495100 IGHV1-46P01743 117 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 IQCJQ1A5X6 159 aa11.06□□□□□ -0.64
GPC1-209ENST00000495100 TMEM68Q96MH6 324 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 178.8 ms