RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NBEAP1P0C6P0 100 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 FOXA3P55318 350 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 RTN4RQ9BZR6 473 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 TRBV20OR9-2A0A075B6H5 130 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 NKX2-8O15522 239 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 TNFSF13O75888 250 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 TBR1Q16650 682 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 FAM106AQ4KMX7 169 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 UBR3Q6ZT12 1888 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 GHRHP01286 108 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 TSPOP30536 169 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 LRTM2Q8N967 370 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 SNRNP200O75643 2136 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 TRAV2A0A0B4J234 112 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A1W2PR77 199 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 NPPCP23582 126 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 ZNF585BQ52M93 769 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 OR10J3Q5JRS4 329 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 Q6ZT83 130 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 ZNF525Q8N782 197 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 FGF11Q92914 225 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 C18orf15Q96N68 181 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 TMEM106BQ9NUM4 274 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 IGKV3D-11A0A0A0MRZ8 115 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 IGKV1D-43A0A0B4J1Z2 117 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 RAMP1O60894 148 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 NDUFC2O95298 119 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 MOSP00540 346 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 CGAP01215 116 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 APOHP02749 345 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 GPX1P07203 203 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 PEX7O00628 323 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 TRACP01848 142 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 ACP7Q6ZNF0 438 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 PNKDQ8N490 385 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 SPANXCQ9NY87 97 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 TFF3Q07654 80 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 RPL39P5Q59GN2 51 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 RNASEH2CQ8TDP1 164 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 TMEM170AQ8WVE7 144 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 PILRBQ9UKJ0 227 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 SCO2A0A1W2PP80 73 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 GAGE12BA1L429 117 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 ITGB1BP1O14713 200 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 ICAM4Q14773 271 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 IMMP2LQ96T52 175 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 RNF126Q9BV68 326 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 RNF115Q9Y4L5 304 aa8.66□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A1B0GUT8 65 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 F8VVB4 439 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 F8VWA3 439 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 GLRXP35754 106 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 ATP5G2Q06055 141 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 SLC25A2Q9BXI2 301 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 SLC25A15Q9Y619 301 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 CHCHD2Q9Y6H1 151 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 SERF1AO75920 110 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 Q6AWC8 147 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 EEF1AKMT3Q96AZ1 226 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 C1QTNF5Q9BXJ0 243 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 LOC105371242A0A075B767 164 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 C17orf98A8MV24 154 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 IGFBP2P18065 325 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 STARD6P59095 220 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 RRN3P1Q2M238 152 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 PPP1R32Q7Z5V6 425 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 FAM19A2Q8N3H0 131 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 CACNG8Q8WXS5 425 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 KLF12Q9Y4X4 402 aa8.65□□□□□ -1.02
LIMCH1-203ENST00000396595 IGHV3-48P01763 117 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 LGALS1P09382 135 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 ATP5G3P48201 142 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 RPL23P62829 140 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 LY6G6FQ5SQ64 297 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 S100A7L2Q5SY68 101 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 SHANK3Q9BYB0 1731 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 TM4SF5O14894 197 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 PMVKQ15126 192 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 ZNRF1Q8ND25 227 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 PHLDA1Q8WV24 401 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 RAX2Q96IS3 184 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 SS18L2Q9UHA2 77 aa8.65□□□□□ -1.03
LIMCH1-203ENST00000396595 FOXI3A8MTJ6 420 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 FGF16O43320 207 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 STPG1Q5TH74 334 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 PEAR1Q5VY43 1037 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 REPIN1Q9BWE0 567 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 IGHV1-69-2A0A0G2JMI3 117 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 NDUFA3O95167 84 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 MPZP25189 248 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 TDGF1P3P51864 188 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 SUMO2P61956 95 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 C1orf194Q5T5A4 169 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 C1orf122Q6ZSJ8 110 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 RPP21Q9H633 154 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 COL5A3P25940 1745 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 IGKV3D-15A0A087WSY6 115 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 IGKV3-15P01624 115 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 CST9LQ9H4G1 147 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 IZUMO1RA6ND01 250 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms