RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 C17orf50Q8WW18 174 aa9□□□□□ -0.97
SVIP-201ENST00000354193 DUX5Q96PT3 197 aa9□□□□□ -0.97
SVIP-201ENST00000354193 COA4Q9NYJ1 87 aa9□□□□□ -0.97
SVIP-201ENST00000354193 ZNF727A8MUV8 499 aa9□□□□□ -0.97
SVIP-201ENST00000354193 FCN3O75636 299 aa9□□□□□ -0.97
SVIP-201ENST00000354193 DVL1P1P54792 670 aaPredicted RBP9□□□□□ -0.97
SVIP-201ENST00000354193 BLNKQ8WV28 456 aa9□□□□□ -0.97
SVIP-201ENST00000354193 C15orf62A8K5M9 175 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 SNAPINO95295 136 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 MT-CO2P00403 227 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 CGB3P0DN86 165 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 CGB7P0DN87 165 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 AREGP15514 252 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 SSTP61278 116 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 FXYD3Q14802 87 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 DHRS7BQ6IAN0 325 aaPredicted RBP8.99□□□□□ -0.97
SVIP-201ENST00000354193 MMD2Q8IY49 270 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 CYB561D1Q8N8Q1 229 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 OR1B1Q8NGR6 318 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 NIPSNAP3BQ9BS92 247 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 NPCDR1Q9BY65 106 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 MLXQ9UH92 298 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 AGAP20933 346 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 ZP3P21754 424 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 TAGLN2P37802 199 aaKnown RBP8.99□□□□□ -0.97
SVIP-201ENST00000354193 PPP1R27Q86WC6 154 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 ODF3L1Q8IXM7 274 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 A0A1W2PN81 502 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 RBFOX2O43251 390 aaKnown RBP eCLIP8.99□□□□□ -0.97
SVIP-201ENST00000354193 COX7A2P2O60397 106 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 FOXH1O75593 365 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 LYL1P12980 280 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 CHRNA7P36544 502 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 LYZP61626 148 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 RBMS3Q6XE24 437 aaKnown RBP8.99□□□□□ -0.97
SVIP-201ENST00000354193 PDPNQ86YL7 162 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 UHRF2Q96PU4 802 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 PLA2G2EQ9NZK7 142 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 TRIM77I1YAP6 450 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 ATP6V1FQ16864 119 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 LRRC75BQ2VPJ9 315 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 ZNF843Q8N446 348 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 LFNGQ8NES3 379 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 CORO2AQ92828 525 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 EAF1Q96JC9 268 aaPredicted RBP8.99□□□□□ -0.97
SVIP-201ENST00000354193 SMIM7Q9BQ49 75 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 KAAG1Q9UBP8 84 aa8.99□□□□□ -0.97
SVIP-201ENST00000354193 IGHV4-61A0A0C4DH41 118 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 BRS3P32247 399 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 Q56UQ5 140 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 PUSL1Q8N0Z8 303 aaKnown RBP8.98□□□□□ -0.97
SVIP-201ENST00000354193 GATAD1Q8WUU5 269 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 IGHV3OR16-13A0A075B7E8 117 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 IGHV3-74A0A0B4J1X5 117 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 ZFP82Q8N141 532 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 ZNF439Q8NDP4 499 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 RASL11BQ9BPW5 248 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 NPBWR1P48145 328 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 OR4X1Q8NH49 305 aa8.98□□□□□ -0.97
SVIP-201ENST00000354193 SRSF12Q8WXF0 261 aaKnown RBP8.98□□□□□ -0.97
SVIP-201ENST00000354193 RAB19A4D1S5 217 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 E7EUB6 86 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 LGALS7P47929 136 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 PSG5Q15238 335 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 TMEM14EPQ6UXP3 125 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 SGK494Q96LW2 274 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 SELENOKQ9Y6D0 94 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 IGHV4-30-2A0A087WSY4 118 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 FAM74A7A6NL05 159 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 LINC00869P0C866 280 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 SAA4P35542 130 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 FAM74A3Q4VXF1 159 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 TMEM41BQ5BJD5 291 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 SLC35B3Q9H1N7 401 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 RAI1Q7Z5J4 1906 aaPredicted RBP8.97□□□□□ -0.97
SVIP-201ENST00000354193 FLNAP21333 2647 aaKnown RBP8.97□□□□□ -0.97
SVIP-201ENST00000354193 ZANQ9Y493 2812 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 C9JQL5 133 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 KHDC1LQ5JSQ8 128 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 RPP25LQ8N5L8 163 aaKnown RBP8.97□□□□□ -0.97
SVIP-201ENST00000354193 OR5B3Q8NH48 314 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 SEBOXQ9HB31 216 aaPredicted RBP8.97□□□□□ -0.97
SVIP-201ENST00000354193 HIF1ANQ9NWT6 349 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 ITPR3Q14573 2671 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 IGKV3-7A0A075B6H7 116 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 RNF223E7ERA6 249 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 CCDC144NLQ6NUI1 221 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 STPG3Q8N7X2 389 aa8.97□□□□□ -0.97
SVIP-201ENST00000354193 ZNF429Q86V71 674 aa8.96□□□□□ -0.97
SVIP-201ENST00000354193 REG4Q9BYZ8 158 aa8.96□□□□□ -0.97
SVIP-201ENST00000354193 MBP02144 154 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 TREML4Q6UXN2 200 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 ZNF841Q6ZN19 808 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 SLC16A13Q7RTY0 426 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 TMEM30BQ3MIR4 351 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 TPTE2P1Q5T6R2 138 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 OR5AN1Q8NGI8 311 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 UNKLQ9H9P5 680 aaKnown RBP8.96□□□□□ -0.98
SVIP-201ENST00000354193 SERTAD4Q9NUC0 356 aa8.96□□□□□ -0.98
SVIP-201ENST00000354193 KPTNQ9Y664 436 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms