RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KLF17Q5JT82 389 aaPredicted RBP11.25□□□□□ -0.61
SS18-201ENST00000269137 RNF141Q8WVD5 230 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 LINC00052Q96N35 136 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 FOXC2Q99958 501 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 UQCC1Q9NVA1 299 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 CSMD1Q96PZ7 3565 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 KRBOX1C9JBD0 128 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 FCN1O00602 326 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 IFNA4P05014 189 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 RNASE2P10153 161 aaKnown RBP11.25□□□□□ -0.61
SS18-201ENST00000269137 TMEM11P17152 192 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 SNCAP37840 140 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 SULT1A2P50226 295 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 BPIFB3P59826 476 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 SSBP2P81877 361 aaPredicted RBP11.25□□□□□ -0.61
SS18-201ENST00000269137 WT1-ASQ06250 92 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 BRD3OSQ6XYD6 125 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 SCGB1C1Q8TD33 95 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 SRSF8Q9BRL6 282 aaKnown RBP11.25□□□□□ -0.61
SS18-201ENST00000269137 C1RLQ9NZP8 487 aa11.25□□□□□ -0.61
SS18-201ENST00000269137 IGLC7A0M8Q6 106 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 TEX46H3BTG2 121 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 DLK1P80370 383 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 FAM120AOSQ5T036 256 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 SLC25A24Q6NUK1 477 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 WDR61Q9GZS3 305 aaKnown RBP11.24□□□□□ -0.61
SS18-201ENST00000269137 SH3BGRL3Q9H299 93 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 PLA2G2EQ9NZK7 142 aa11.24□□□□□ -0.61
SS18-201ENST00000269137 A0A0U1RQK1 487 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 MDKP21741 143 aaPredicted RBP11.23□□□□□ -0.61
SS18-201ENST00000269137 RAB5CP51148 216 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 SAT2Q96F10 170 aaPredicted RBP11.23□□□□□ -0.61
SS18-201ENST00000269137 UBE2L5PA0A1B0GUS4 154 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 FNDC10F2Z333 226 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 OR13C7P0DN81 318 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 SUB1P53999 127 aaKnown RBP eCLIP11.23□□□□□ -0.61
SS18-201ENST00000269137 GNB1P62873 340 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 TUSC1Q2TAM9 212 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 CYB5R2Q6BCY4 276 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 ZNF562Q6V9R5 426 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 ZNF114Q8NC26 417 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 WFDC11Q8NEX6 87 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 SRSF12Q8WXF0 261 aaKnown RBP11.23□□□□□ -0.61
SS18-201ENST00000269137 TAF15Q92804 592 aaKnown RBP eCLIP11.23□□□□□ -0.61
SS18-201ENST00000269137 PSMG3Q9BT73 122 aaPredicted RBP11.23□□□□□ -0.61
SS18-201ENST00000269137 FAM96BQ9Y3D0 163 aa11.23□□□□□ -0.61
SS18-201ENST00000269137 CELSR1Q9NYQ6 3014 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 TEX15Q9BXT5 2789 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 NCBP2LA6PVI3 153 aaKnown RBP11.22□□□□□ -0.61
SS18-201ENST00000269137 TEX22C9J3V5 150 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 UMAD1C9J7I0 102 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 SCO1O75880 301 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 FBP1P09467 338 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 M6PRP20645 277 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 RUNX1Q01196 453 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 PVRIGQ6DKI7 326 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 CENPVQ7Z7K6 275 aaPredicted RBP11.22□□□□□ -0.61
SS18-201ENST00000269137 OR2G3Q8NGZ4 309 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 PIFOQ8TCI5 191 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 TIMM9Q9Y5J7 89 aa11.22□□□□□ -0.61
SS18-201ENST00000269137 TRIM77I1YAP6 450 aa11.21□□□□□ -0.61
SS18-201ENST00000269137 CNIH1O95406 144 aa11.21□□□□□ -0.61
SS18-201ENST00000269137 Q8N9W7 124 aa11.21□□□□□ -0.61
SS18-201ENST00000269137 RNASEH2CQ8TDP1 164 aaKnown RBP11.21□□□□□ -0.61
SS18-201ENST00000269137 P2RX4Q99571 388 aa11.21□□□□□ -0.61
SS18-201ENST00000269137 WDR83OSQ9Y284 106 aa11.21□□□□□ -0.61
SS18-201ENST00000269137 ZNF705EA8MWA4 302 aaPredicted RBP11.21□□□□□ -0.62
SS18-201ENST00000269137 MPDU1O75352 247 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 FSHBP01225 129 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 GPX4P36969 197 aaPredicted RBP11.21□□□□□ -0.62
SS18-201ENST00000269137 SERF2P84101 59 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 FXYD3Q14802 87 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 SUN5Q8TC36 379 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 CACNG8Q8WXS5 425 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 MARC2Q969Z3 335 aa11.21□□□□□ -0.62
SS18-201ENST00000269137 FLNAP21333 2647 aaKnown RBP11.2□□□□□ -0.62
SS18-201ENST00000269137 HLA-DRB1P01911 266 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 AREGP15514 252 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 CX3CL1P78423 397 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 BLOC1S1P78537 153 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 ARSJQ5FYB0 599 aaPredicted RBP11.2□□□□□ -0.62
SS18-201ENST00000269137 RSG1Q9BU20 258 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 NPVFQ9HCQ7 196 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 RFNGQ9Y644 331 aa11.2□□□□□ -0.62
SS18-201ENST00000269137 RAB19A4D1S5 217 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 FGF7P21781 194 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 CD69Q07108 199 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 BTNL8Q6UX41 500 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 TREML4Q6UXN2 200 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 TMEM182Q6ZP80 229 aaPredicted RBP11.19□□□□□ -0.62
SS18-201ENST00000269137 OR1P1Q8NH06 330 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 NANPQ8TBE9 248 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 SSMEM1Q8WWF3 244 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 RBM14Q96PK6 669 aaKnown RBP11.19□□□□□ -0.62
SS18-201ENST00000269137 SSX3Q99909 188 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 PARP11Q9NR21 331 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 TMA7Q9Y2S6 64 aaKnown RBP11.19□□□□□ -0.62
SS18-201ENST00000269137 LSM4Q9Y4Z0 139 aaKnown RBP11.19□□□□□ -0.62
SS18-201ENST00000269137 TLN2Q9Y4G6 2542 aa11.19□□□□□ -0.62
SS18-201ENST00000269137 UQCC3Q6UW78 93 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms