RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 TUSC1Q2TAM9 212 aa18.2■□□□□ 0.5
SMARCB1-201ENST00000263121 MRPL41Q8IXM3 137 aaKnown RBP18.2■□□□□ 0.5
SMARCB1-201ENST00000263121 GNPNAT1Q96EK6 184 aaPredicted RBP18.2■□□□□ 0.5
SMARCB1-201ENST00000263121 SVEP1Q4LDE5 3571 aa18.2■□□□□ 0.5
SMARCB1-201ENST00000263121 FGF16O43320 207 aa18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 SULT1A2P50226 295 aa18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 RUNX1Q01196 453 aa18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 SLC25A24Q6NUK1 477 aa18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 SCGB1C1Q8TD33 95 aa18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 RNF141Q8WVD5 230 aa18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 SRSF8Q9BRL6 282 aaKnown RBP18.19■□□□□ 0.5
SMARCB1-201ENST00000263121 MDKP21741 143 aaPredicted RBP18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 HSD17B13Q7Z5P4 300 aaPredicted RBP18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 SLC7A5P1Q8MH63 180 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 ZNF114Q8NC26 417 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 LRRC20Q8TCA0 184 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 RFNGQ9Y644 331 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 CSMD1Q96PZ7 3565 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 PLXNB1O43157 2135 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 CNIH1O95406 144 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 AREGP15514 252 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 ZNF562Q6V9R5 426 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 TAF15Q92804 592 aaKnown RBP eCLIP18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 P2RX4Q99571 388 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 SSX3Q99909 188 aa18.18■□□□□ 0.5
SMARCB1-201ENST00000263121 LINC00862A6NCI5 91 aa18.17■□□□□ 0.5
SMARCB1-201ENST00000263121 FXYD3Q14802 87 aa18.17■□□□□ 0.5
SMARCB1-201ENST00000263121 PVRIGQ6DKI7 326 aa18.17■□□□□ 0.5
SMARCB1-201ENST00000263121 HLA-DRB1P01911 266 aa18.16■□□□□ 0.5
SMARCB1-201ENST00000263121 REG1AP05451 166 aa18.16■□□□□ 0.5
SMARCB1-201ENST00000263121 SUB1P53999 127 aaKnown RBP eCLIP18.16■□□□□ 0.5
SMARCB1-201ENST00000263121 AANATQ16613 207 aa18.16■□□□□ 0.5
SMARCB1-201ENST00000263121 OR2G3Q8NGZ4 309 aa18.16■□□□□ 0.5
SMARCB1-201ENST00000263121 FASNP49327 2511 aaKnown RBP18.16■□□□□ 0.5
SMARCB1-201ENST00000263121 FNDC10F2Z333 226 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 CX3CL1P78423 397 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 ARSJQ5FYB0 599 aaPredicted RBP18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 NANPQ8TBE9 248 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 SSMEM1Q8WWF3 244 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 RBM14Q96PK6 669 aaKnown RBP18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 PSMG3Q9BT73 122 aaPredicted RBP18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 RSG1Q9BU20 258 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 WDR83OSQ9Y284 106 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 FGF7P21781 194 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 CXorf58Q96LI9 332 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 CELSR1Q9NYQ6 3014 aa18.15■□□□□ 0.5
SMARCB1-201ENST00000263121 APELAP0DMC3 54 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 NDPQ00604 133 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 TMEM182Q6ZP80 229 aaPredicted RBP18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 C9orf139Q6ZV77 190 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 CENPVQ7Z7K6 275 aaPredicted RBP18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 RNASEH2CQ8TDP1 164 aaKnown RBP18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 ARPC1AQ92747 370 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 RASL11BQ9BPW5 248 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 SLC25A33Q9BSK2 321 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 TIMM9Q9Y5J7 89 aa18.14■□□□□ 0.49
SMARCB1-201ENST00000263121 ITPR2Q14571 2701 aa18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 IGHV7-81A0A0B4J1V7 117 aa18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 SMAD7O15105 426 aaKnown RBP18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 TREML4Q6UXN2 200 aa18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 BCL6BQ8N143 479 aaPredicted RBP18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 C5orf56Q8N8D9 126 aa18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 SAT2Q96F10 170 aaPredicted RBP18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 MOB4Q9Y3A3 225 aa18.13■□□□□ 0.49
SMARCB1-201ENST00000263121 ZNF705EA8MWA4 302 aaPredicted RBP18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 H3BUX3 64 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 RAB5CP51148 216 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 MFAP2P55001 183 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 CD69Q07108 199 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 BTNL8Q6UX41 500 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 TMEM219Q86XT9 240 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 OR1P1Q8NH06 330 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 ABHD5Q8WTS1 349 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 NPVFQ9HCQ7 196 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 F11RQ9Y624 299 aaKnown RBP18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 CREBBPQ92793 2442 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 MDFIC2A0A1B0GVS7 189 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 SMCO3A2RU48 225 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 A6NDX4 124 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 UMAD1C9J7I0 102 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 ATP6V1G1O75348 118 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 GPX4P36969 197 aaPredicted RBP18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 DEFB112Q30KQ8 113 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 CACNG8Q8WXS5 425 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 FAM103A1Q9BTL3 118 aaKnown RBP18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 NPCDR1Q9BY65 106 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 MED9Q9NWA0 146 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 LSM4Q9Y4Z0 139 aaKnown RBP18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 ZANQ9Y493 2812 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 NAV3Q8IVL0 2385 aa18.12■□□□□ 0.49
SMARCB1-201ENST00000263121 ITPR3Q14573 2671 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 MPDU1O75352 247 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 CTRB1P17538 263 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 CTRB2Q6GPI1 263 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 C19orf35Q6ZS72 473 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 HSPB9Q9BQS6 159 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 FBXO7Q9Y3I1 522 aa18.11■□□□□ 0.49
SMARCB1-201ENST00000263121 HECTD1Q9ULT8 2610 aa18.1■□□□□ 0.49
SMARCB1-201ENST00000263121 TRIM77I1YAP6 450 aa18.1■□□□□ 0.49
SMARCB1-201ENST00000263121 SERF2P84101 59 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms