RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ZNF343Q6P1L6 599 aa15.03■□□□□ -0
SHKBP1-221ENST00000599833 OR1N2Q8NGR9 330 aa15.03■□□□□ -0
SHKBP1-221ENST00000599833 GALNT14Q96FL9 552 aa15.03■□□□□ -0
SHKBP1-221ENST00000599833 SRSF8Q9BRL6 282 aaKnown RBP15.03■□□□□ -0
SHKBP1-221ENST00000599833 QTRT1Q9BXR0 403 aaKnown RBP15.03■□□□□ -0
SHKBP1-221ENST00000599833 TRBV12-3P01733 135 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 REG1AP05451 166 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 CD33P20138 364 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 FAUP35544 74 aaKnown RBP15.02■□□□□ -0
SHKBP1-221ENST00000599833 ZNF616Q08AN1 781 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 TMEM187Q14656 261 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 Q6ZRM9 215 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 TMEM56Q96MV1 263 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 COMMD5Q9GZQ3 224 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 ZNF355PQ9NSJ1 428 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 PRR13Q9NZ81 148 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 OR51B2Q9Y5P1 312 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 TMEM56-RWDD3S4R434 201 aa15.02■□□□□ -0
SHKBP1-221ENST00000599833 DNAH9Q9NYC9 4486 aa15.02□□□□□ -0.01
SHKBP1-221ENST00000599833 IGLV11-55A0A075B6I3 123 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 PLA2G10O15496 165 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 WIPF1O43516 503 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 CD40LGP29965 261 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 RHOGP84095 191 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 DHODHQ02127 395 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 ZNF57Q68EA5 555 aaPredicted RBP15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 SLC25A42Q86VD7 318 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 SELENOHQ8IZQ5 122 aaKnown RBP15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 OR1L8Q8NGR8 309 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 RCC1LQ96I51 464 aaKnown RBP15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 USMG5Q96IX5 58 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 BATF3Q9NR55 127 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 PTTG2Q9NZH5 202 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 PRNDQ9UKY0 176 aa15.01□□□□□ -0.01
SHKBP1-221ENST00000599833 FAM223BA6NKX1 122 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 TRAPPC2P0DI81 140 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 TRAPPC2BP0DI82 140 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 CCR6P51684 374 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 SLURP1P55000 103 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 MFAP2P55001 183 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 AARDQ4LEZ3 155 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 H2BFWTQ7Z2G1 175 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 FAM223AQ8IWN6 122 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 OR5B3Q8NH48 314 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 TSC22D3Q99576 134 aa15□□□□□ -0.01
SHKBP1-221ENST00000599833 A0A0G2JLM5 398 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 OR2J3O76001 311 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 NDUFB8O95169 186 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 HSPB1P04792 205 aaKnown RBP14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 TRIM16LQ309B1 348 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 TRIQKQ629K1 86 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 THOC7Q6I9Y2 204 aaKnown RBP14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 ZNF429Q86V71 674 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 NECAP1Q8NC96 275 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 SCGB3A2Q96PL1 93 aa14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 SLC25A21Q9BQT8 299 aaPredicted RBP14.99□□□□□ -0.01
SHKBP1-221ENST00000599833 LINC01619G3V211 115 aa14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 SNAPC5O75971 98 aa14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 OR8U8P0C7N1 319 aa14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 PRCDQ00LT1 54 aa14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 DCUN1D4Q92564 292 aa14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 DLX4Q92988 240 aaPredicted RBP14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 RBPMSQ93062 196 aaKnown RBP14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 LSM10Q969L4 123 aaKnown RBP14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 FKBP11Q9NYL4 201 aa14.98□□□□□ -0.01
SHKBP1-221ENST00000599833 C13orf42A0A1B0GVH6 325 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 NAP1L6A6NFF2 107 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 NDUFB6O95139 128 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 AKR1C4P17516 323 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 C15orf32Q32M92 178 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 SGPP2Q8IWX5 399 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 IL22RA2Q969J5 263 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 GPR146Q96CH1 333 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 CCDC140Q96MF4 163 aa14.97□□□□□ -0.01
SHKBP1-221ENST00000599833 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 ST8SIA3O43173 380 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 OR13C7P0DN81 318 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 AKR1C2P52895 323 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 KRTAP10-11P60412 298 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 HSPE1P61604 102 aaKnown RBP14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 DEFA6Q01524 100 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 EGFEM1PQ0D2K5 195 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 EXOSC2Q13868 293 aaKnown RBP14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 RBMS2Q15434 407 aaKnown RBP14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 NMSQ5H8A3 153 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 HSD17B13Q7Z5P4 300 aaPredicted RBP14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 SLC35G3Q8N808 338 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 OR4A16Q8NH70 328 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 FBXL7Q9UJT9 491 aa14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 F11RQ9Y624 299 aaKnown RBP14.96□□□□□ -0.01
SHKBP1-221ENST00000599833 LINC00854A0A1B0GVQ3 168 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 ANKRD34BA5PLL1 514 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 MFSD2BA6NFX1 497 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 INS-IGF2F8WCM5 200 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 BMPR1BO00238 502 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 DUS4LO95620 317 aaKnown RBP14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 HOXD3P31249 432 aaPredicted RBP14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 RAB25P57735 213 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 ATP5G2Q06055 141 aa14.95□□□□□ -0.02
SHKBP1-221ENST00000599833 PDLIM3Q53GG5 364 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms