RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 HINT2Q9BX68 163 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 ZNF436Q9C0F3 470 aaPredicted RBP6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 C5orf66Q9H5L9 145 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 MAP6D1Q9H9H5 199 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 ACOT13Q9NPJ3 140 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 ANXA10Q9UJ72 324 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 NSG2Q9Y328 171 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 TPRKBQ9Y3C4 175 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 UFC1Q9Y3C8 167 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 LRP1BQ9NZR2 4599 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 TRAV25A0A0B4J276 109 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 MEIS3P1A6NDR6 274 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 F8W735 103 aaPredicted RBP6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 UPK2O00526 184 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 PDCD5O14737 125 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 HRASP01112 189 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 IGHV3-48P01763 117 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 HIST1H1BP16401 226 aaKnown RBP6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 MYL9P24844 172 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 PSMA1P25786 263 aaKnown RBP6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 FCGR2CP31995 323 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 ADMP35318 185 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 MAS1LP35410 378 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 GNG2P59768 71 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 KLK9Q2XQG4 91 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 LGALS9CQ6DKI2 356 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 CNIH2Q6PI25 160 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 OR13F1Q8NGS4 319 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 LGALS14Q8TCE9 139 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 MARC2Q969Z3 335 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 CXorf58Q96LI9 332 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 RARRES2Q99969 163 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 TMEM140Q9NV12 185 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 BET1LQ9NYM9 111 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 KLK9Q9UKQ9 250 aa6.34□□□□□ -1.39
SHKBP1-220ENST00000599716 AGRNO00468 2067 aa6.34□□□□□ -1.4
SHKBP1-220ENST00000599716 TRAV1-2A0A0B4J238 106 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 IGHV3-66A0A0C4DH42 116 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 KIR2DL5BA0A0G2JN68 375 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 KIR2DL5BA0A0G2JPC4 375 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 TEX50A0A1B0GTY4 177 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 DBX1A6NMT0 343 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 UBE2CO00762 179 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 XRCC3O43542 346 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 CLEC2LP0C7M8 214 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 GALP22466 123 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 PTBP1P26599 531 aaKnown RBP eCLIP6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 RBMS2Q15434 407 aaKnown RBP6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 ZNF66Q6ZN08 573 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 ZNF818PQ6ZRF7 136 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 PRSS48Q7RTY5 328 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 TMEM17Q86X19 198 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 KIR2DL5AQ8N109 375 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 OR5H6Q8NGV6 325 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 OR11H2Q8NH07 326 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 KIR2DL5BQ8NHK3 375 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 C11orf45Q8TAV5 145 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 SCARB1Q8WTV0 552 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 QTRT1Q9BXR0 403 aaKnown RBP6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 COMMD5Q9GZQ3 224 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 SLC5A7Q9GZV3 580 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 RNF167Q9H6Y7 350 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 DAZ1Q9NQZ3 744 aaKnown RBP6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 DAPK2Q9UIK4 370 aa6.33□□□□□ -1.4
SHKBP1-220ENST00000599716 OR4C46A6NHA9 309 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 IGLL5B9A064 214 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 K7EIM0 57 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 YIF1AO95070 293 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 PPYP01298 95 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 CTXN2P0C2S0 81 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 ELLP55199 621 aaPredicted RBP6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 ARPC4P59998 168 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 Q56UQ5 140 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 LEMD1Q68G75 181 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 LAMTOR1Q6IAA8 161 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 LILRB2Q8N423 598 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 FAM24BQ8N5W8 94 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 TMEM217Q8N7C4 229 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 GDPD1Q8N9F7 314 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 BEST4Q8NFU0 473 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 DMBX1Q8NFW5 382 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 GALNT14Q96FL9 552 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 CNBD2Q96M20 576 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 CSTL1Q9H114 145 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 DCSTAMPQ9H295 470 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 VCXQ9H320 206 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 NDUFB11Q9NX14 153 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 C21orf62Q9NYP8 219 aa6.32□□□□□ -1.4
SHKBP1-220ENST00000599716 TRAV18A0A075B6X5 111 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 TRDV1A0A1B0GX56 115 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 MPTX1A8MV57 137 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 CHEK1O14757 476 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 SLC22A5O76082 557 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 CA1P00915 261 aaPredicted RBP6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 APOHP02749 345 aaPredicted RBP6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 RLN1P04808 185 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 SERPINE2P07093 398 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 CTSGP08311 255 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 TRAPPC2P0DI81 140 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 TRAPPC2BP0DI82 140 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 154.8 ms