RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZNF57Q68EA5 555 aaPredicted RBP11.62□□□□□ -0.55
UPF1-202ENST00000594243 CTRB2Q6GPI1 263 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 SGPP2Q8IWX5 399 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 NECAP1Q8NC96 275 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 OR5B3Q8NH48 314 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 NAA60Q9H7X0 242 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 NSG2Q9Y328 171 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 CRYM-AS1A6NIL9 109 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 CYB5BO43169 146 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 PRH1P02810 166 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 AREGP15514 252 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 HIST1H1BP16401 226 aaKnown RBP11.61□□□□□ -0.55
UPF1-202ENST00000594243 RHOGP84095 191 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 ATP5G2Q06055 141 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 ZNF343Q6P1L6 599 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 LINC00299Q6ZSB3 139 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 TMEM56Q96MV1 263 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 TMEM222Q9H0R3 208 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 AKIP1Q9NQ31 210 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 NDUFA4L2Q9NRX3 87 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 TMEM14BQ9NUH8 114 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 WNK1Q9H4A3 2382 aa11.61□□□□□ -0.55
UPF1-202ENST00000594243 PLXNB1O43157 2135 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 IGHV4OR15-8A0A075B7B6 117 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 A0A087WW49 117 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 C15orf61A6NNL5 157 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 RBMXL2O75526 392 aaKnown RBP11.6□□□□□ -0.55
UPF1-202ENST00000594243 CDS2O95674 445 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 OR5AC1P0C628 307 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 AKR1C2P52895 323 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 BAK1Q16611 211 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 FAM209BQ5JX69 171 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 GLYATL2Q8WU03 294 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 LSM10Q969L4 123 aaKnown RBP11.6□□□□□ -0.55
UPF1-202ENST00000594243 RRNAD1Q96FB5 475 aaKnown RBP11.6□□□□□ -0.55
UPF1-202ENST00000594243 SLC25A21Q9BQT8 299 aaPredicted RBP11.6□□□□□ -0.55
UPF1-202ENST00000594243 HINT2Q9BX68 163 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 THYN1Q9P016 225 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 PEF1Q9UBV8 284 aaKnown RBP11.6□□□□□ -0.55
UPF1-202ENST00000594243 TGP01266 2768 aa11.6□□□□□ -0.55
UPF1-202ENST00000594243 NOTCH1P46531 2555 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 IGLC7A0M8Q6 106 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 ANKRD34BA5PLL1 514 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 NAP1L6A6NFF2 107 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 OR2J3O76001 311 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 REG1AP05451 166 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 ZP3P21754 424 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 KLK9Q2XQG4 91 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 C9orf66Q5T8R8 295 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 OR10W1Q8NGF6 305 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 DCUN1D4Q92564 292 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 GALNT14Q96FL9 552 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 BATF3Q9NR55 127 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 ZMAT5Q9UDW3 170 aaKnown RBP11.59□□□□□ -0.55
UPF1-202ENST00000594243 FBXL7Q9UJT9 491 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 KLK9Q9UKQ9 250 aa11.59□□□□□ -0.55
UPF1-202ENST00000594243 CENPXA8MT69 81 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 OVOL1O14753 267 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 IGKV1-5P01602 117 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 OR13C7P0DN81 318 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 ANXA3P12429 323 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 AKR1C4P17516 323 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 MECP2P51608 486 aaKnown RBP11.58□□□□□ -0.56
UPF1-202ENST00000594243 SLURP1P55000 103 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 HSPE1P61604 102 aaKnown RBP11.58□□□□□ -0.56
UPF1-202ENST00000594243 DEFA5Q01523 94 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 C15orf32Q32M92 178 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 CNPY1Q3B7I2 92 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 ZNF429Q86V71 674 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 FAM219AQ8IW50 185 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 OR1L6Q8NGR2 347 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 RNASE11Q8TAA1 199 aaKnown RBP11.58□□□□□ -0.56
UPF1-202ENST00000594243 DLX4Q92988 240 aaPredicted RBP11.58□□□□□ -0.56
UPF1-202ENST00000594243 RBPMSQ93062 196 aaKnown RBP11.58□□□□□ -0.56
UPF1-202ENST00000594243 FANCD2OSQ96PS1 177 aa11.58□□□□□ -0.56
UPF1-202ENST00000594243 IGLV11-55A0A075B6I3 123 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 PIGBOS1A0A0B4J2F0 54 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 DBX1A6NMT0 343 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 SEC14L6B5MCN3 397 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 HOXD3P31249 432 aaPredicted RBP11.57□□□□□ -0.56
UPF1-202ENST00000594243 INSL3P51460 131 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 WT1-ASQ06250 92 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 EXOSC2Q13868 293 aaKnown RBP11.57□□□□□ -0.56
UPF1-202ENST00000594243 TATDN3Q17R31 274 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 REC114Q7Z4M0 266 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 SELENOHQ8IZQ5 122 aaKnown RBP11.57□□□□□ -0.56
UPF1-202ENST00000594243 IL22RA2Q969J5 263 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 TMEM230Q96A57 120 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 CXorf58Q96LI9 332 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 SDHCQ99643 169 aaPredicted RBP11.57□□□□□ -0.56
UPF1-202ENST00000594243 C7orf50Q9BRJ6 194 aaKnown RBP11.57□□□□□ -0.56
UPF1-202ENST00000594243 PDCD10Q9BUL8 212 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 TMEM56-RWDD3S4R434 201 aa11.57□□□□□ -0.56
UPF1-202ENST00000594243 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.56□□□□□ -0.56
UPF1-202ENST00000594243 A0A0B4J293 547 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 NDUFB8O95169 186 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 P0C879 139 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 IL7P13232 177 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 PRCDQ00LT1 54 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 RBMS2Q15434 407 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms