RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 NANPQ8TBE9 248 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 RNF141Q8WVD5 230 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 FOXC2Q99958 501 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 TMEM147Q9BVK8 224 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 ZNF430Q9H8G1 570 aaPredicted RBP4.99□□□□□ -1.61
LIG3-206ENST00000586058 UQCC1Q9NVA1 299 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 PFDN2Q9UHV9 154 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 WNK2Q9Y3S1 2297 aa4.99□□□□□ -1.61
LIG3-206ENST00000586058 ABCA2Q9BZC7 2435 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 ADGRG4Q8IZF6 3080 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 CENPVL3A0A0U1RRI6 287 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 RPS10-NUDT3A0A1W2PQS6 291 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 MPDU1O75352 247 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 PRH1P02810 166 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 OPN1MWP04001 364 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 OPN1MW2P0DN77 364 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 OPN1MW3P0DN78 364 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 IGHV4-31P0DP07 118 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 RAB5CP51148 216 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 DYNLT3P51808 116 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 NHLH2Q02577 135 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 HABP2Q14520 560 aaPredicted RBP4.98□□□□□ -1.61
LIG3-206ENST00000586058 PSG5Q15238 335 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 PRSS8Q16651 343 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 LRRC75BQ2VPJ9 315 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 ARSJQ5FYB0 599 aaPredicted RBP4.98□□□□□ -1.61
LIG3-206ENST00000586058 AKR1C8PQ5T2L2 129 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 RPL7L1Q6DKI1 246 aaKnown RBP4.98□□□□□ -1.61
LIG3-206ENST00000586058 HCP5Q6MZN7 132 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 TMEM14EPQ6UXP3 125 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 ETV3LQ6ZN32 361 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 C16orf82Q7Z2V1 217 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 THNSL2Q86YJ6 484 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 STPG2Q8N412 459 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 HSD17B11Q8NBQ5 300 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 ZNF680Q8NEM1 530 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 CFHR4Q92496 578 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 C1orf159Q96HA4 380 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 EAF1Q96JC9 268 aaPredicted RBP4.98□□□□□ -1.61
LIG3-206ENST00000586058 SLC35E1Q96K37 410 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 SRSF8Q9BRL6 282 aaKnown RBP4.98□□□□□ -1.61
LIG3-206ENST00000586058 GGACTQ9BVM4 153 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 SLC25A32Q9H2D1 315 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 FBXL15Q9H469 300 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 SIGLEC9Q9Y336 463 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 MOB4Q9Y3A3 225 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 FBXO7Q9Y3I1 522 aa4.98□□□□□ -1.61
LIG3-206ENST00000586058 RELNP78509 3460 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 EPG5Q9HCE0 2579 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 IGHV3OR16-10A0A075B7F0 116 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 TRAV3A0A0B4J244 114 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 TEX50A0A1B0GTY4 177 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 UMAD1C9J7I0 102 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 M0QZK8 103 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 KCNAB3O43448 404 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 NDUFA3O95167 84 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 CA2P00918 260 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 IGLV2-23P01705 113 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 SEC11BP0C7V7 166 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 DEFA4P12838 97 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 ATF4P18848 351 aaPredicted RBP4.97□□□□□ -1.61
LIG3-206ENST00000586058 FGF7P21781 194 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 OPRK1P41145 380 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 CAMLGP49069 296 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 BLOC1S1P78537 153 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 DLK1P80370 383 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 HNF4GQ14541 408 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 C5orf64Q2M2E5 130 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 C2orf83Q53S99 150 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 RUSC1-AS1Q66K80 236 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 BRD3OSQ6XYD6 125 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 SPNS3Q6ZMD2 512 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 NPBQ8NG41 125 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 OR5R1Q8NH85 324 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 RNASEH2CQ8TDP1 164 aaKnown RBP4.97□□□□□ -1.61
LIG3-206ENST00000586058 SRSF12Q8WXF0 261 aaKnown RBP4.97□□□□□ -1.61
LIG3-206ENST00000586058 ARPC1AQ92747 370 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 SLC25A33Q9BSK2 321 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 PARD6GQ9BYG4 376 aaPredicted RBP4.97□□□□□ -1.61
LIG3-206ENST00000586058 THYN1Q9P016 225 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.97□□□□□ -1.614e-47■■■■■ 172
LIG3-206ENST00000586058 LRBAP50851 2863 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 MYO18BQ8IUG5 2567 aa4.97□□□□□ -1.61
LIG3-206ENST00000586058 PRRC2AP48634 2157 aaKnown RBP4.97□□□□□ -1.61
LIG3-206ENST00000586058 A0A0U1RQK1 487 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 SRRM4A7MD48 611 aaKnown RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 ZNF705EA8MWA4 302 aaPredicted RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 FNDC10F2Z333 226 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 INS-IGF2F8WCM5 200 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 TRIM77I1YAP6 450 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 SMAD7O15105 426 aaKnown RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 FGF16O43320 207 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 FBXO24O75426 580 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 MBP02144 154 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 FABP1P07148 127 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 OR13C7P0DN81 318 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 SRP14P37108 136 aaKnown RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 VDAC2P45880 294 aaPredicted RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 PAX9P55771 341 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 IFITM2Q01629 132 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms