RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ARPC4P59998 168 aa15.69■□□□□ 0.1
VPS53-216ENST00000574029 CLVS1Q8IUQ0 354 aaPredicted RBP15.69■□□□□ 0.1
VPS53-216ENST00000574029 OR2C3Q8N628 320 aa15.69■□□□□ 0.1
VPS53-216ENST00000574029 RAB2BQ8WUD1 216 aa15.69■□□□□ 0.1
VPS53-216ENST00000574029 SRSF8Q9BRL6 282 aaKnown RBP15.69■□□□□ 0.1
VPS53-216ENST00000574029 ZNF436Q9C0F3 470 aaPredicted RBP15.69■□□□□ 0.1
VPS53-216ENST00000574029 UFC1Q9Y3C8 167 aa15.69■□□□□ 0.1
VPS53-216ENST00000574029 TRAV3A0A0B4J244 114 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 UPK2O00526 184 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 HPRT1P00492 218 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 PPYP01298 95 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 APOA1P02647 267 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 PTHLHP12272 177 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 PTBP1P26599 531 aaKnown RBP eCLIP15.68■□□□□ 0.14e-7■■■■■ 29.2
VPS53-216ENST00000574029 PLET1Q6UQ28 207 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 HOGA1Q86XE5 327 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 GVQW1Q8N7I0 195 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 C5orf66Q9H5L9 145 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 THYN1Q9P016 225 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 COMMD3Q9UBI1 195 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 TP53TG1Q9Y2A0 90 aa15.68■□□□□ 0.1
VPS53-216ENST00000574029 A0A0J9YWU9 116 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 SULT1C2O00338 296 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 FGF2P09038 288 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 NQO2P16083 231 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 TNFRSF9Q07011 255 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 MZT2AQ6P582 158 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 Q6ZWC4 215 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 AP3S1Q92572 193 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 SPAG8Q99932 426 aaPredicted RBP15.67■□□□□ 0.1
VPS53-216ENST00000574029 COMMD5Q9GZQ3 224 aa15.67■□□□□ 0.1
VPS53-216ENST00000574029 IGHV3-35A0A0C4DH35 117 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 CXorf65A6NEN9 183 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 NUPR2A6NF83 97 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 TGOLN2O43493 480 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 EIF4EP06730 217 aaKnown RBP15.66■□□□□ 0.1
VPS53-216ENST00000574029 CBX5P45973 191 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 APOC4P55056 127 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 EWSR1Q01844 656 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS53-216ENST00000574029 CATR1Q13166 79 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 SLC38A6Q8IZM9 456 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 VN1R17PQ8TDU5 208 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 TMEM190Q8WZ59 177 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 SLC5A7Q9GZV3 580 aa15.66■□□□□ 0.1
VPS53-216ENST00000574029 SPRY2O43597 315 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 LY6G6CO95867 125 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 BMI1P35226 326 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 TAS2R20P59543 309 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 PMS2P11Q13670 270 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 SPCS2Q15005 226 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 TMEM69Q5SWH9 247 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 LYG2Q86SG7 212 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 OR10W1Q8NGF6 305 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 QTRT1Q9BXR0 403 aaKnown RBP15.65■□□□□ 0.1
VPS53-216ENST00000574029 PLEKHA2Q9HB19 425 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 TMEM140Q9NV12 185 aa15.65■□□□□ 0.1
VPS53-216ENST00000574029 SMIM31A0A1B0GVY4 71 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 UBE2CO00762 179 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 TSPAN4O14817 238 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 ELK1P19419 428 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 THOC7Q6I9Y2 204 aaKnown RBP15.64■□□□□ 0.09
VPS53-216ENST00000574029 ZNF818PQ6ZRF7 136 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 GDPD1Q8N9F7 314 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 GIMAP1Q8WWP7 306 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 UBQLN2Q9UHD9 624 aa15.64■□□□□ 0.09
VPS53-216ENST00000574029 HPGDSO60760 199 aa15.63■□□□□ 0.09
VPS53-216ENST00000574029 S1PR2O95136 353 aa15.63■□□□□ 0.09
VPS53-216ENST00000574029 ATF4P18848 351 aaPredicted RBP15.63■□□□□ 0.09
VPS53-216ENST00000574029 FXYD4P59646 89 aa15.63■□□□□ 0.09
VPS53-216ENST00000574029 CEMP1Q6PRD7 247 aaPredicted RBP15.63■□□□□ 0.09
VPS53-216ENST00000574029 CD300LFQ8TDQ1 290 aa15.63■□□□□ 0.09
VPS53-216ENST00000574029 DAZ1Q9NQZ3 744 aaKnown RBP15.63■□□□□ 0.09
VPS53-216ENST00000574029 ANAPC10Q9UM13 185 aa15.63■□□□□ 0.09
VPS53-216ENST00000574029 KIR2DL5BA0A0G2JN68 375 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 KIR2DL5BA0A0G2JPC4 375 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 CYB5BO43169 146 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 SERPINE2P07093 398 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 TRAPPC2P0DI81 140 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 TRAPPC2BP0DI82 140 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 WT1-ASQ06250 92 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 DEFB135Q30KP9 77 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 HSD17B13Q7Z5P4 300 aaPredicted RBP15.62■□□□□ 0.09
VPS53-216ENST00000574029 KIR2DL5AQ8N109 375 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 DMBX1Q8NFW5 382 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 OR51H1Q8NH63 302 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 KIR2DL5BQ8NHK3 375 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 DYNC2LI1Q8TCX1 351 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 BSCL2Q96G97 398 aaPredicted RBP15.62■□□□□ 0.09
VPS53-216ENST00000574029 ATP6V0BQ99437 205 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 COMMD9Q9P000 198 aa15.62■□□□□ 0.09
VPS53-216ENST00000574029 TEX50A0A1B0GTY4 177 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 OR2T8A6NH00 312 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 OR13C7P0DN81 318 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 NAT1P18440 290 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 PRSS3P35030 304 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 ODF3L2Q3SX64 289 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 LAMTOR1Q6IAA8 161 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 OR5AP2Q8NGF4 316 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 RNF183Q96D59 192 aa15.61■□□□□ 0.09
VPS53-216ENST00000574029 H3BMQ9 156 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms