RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 KIR2DL2P43627 348 aaPredicted RBP9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SELENOTP62341 195 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TCF15Q12870 199 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 COX19Q49B96 90 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 AARDQ4LEZ3 155 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TPTE2P1Q5T6R2 138 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PEAR1Q5VY43 1037 aaPredicted RBP9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MOB1BQ7L9L4 216 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 BPIFA4PQ86YQ2 179 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PRSS33Q8NF86 280 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 C20orf144Q9BQM9 153 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PRDM14Q9GZV8 571 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SELENOKQ9Y6D0 94 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 IGHV3-72A0A0B4J1Y9 119 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 DKK1O94907 266 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FCER1GP30273 86 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ANKRD39Q53RE8 183 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 INO80CQ6PI98 192 aaPredicted RBP9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FAM19A2Q8N3H0 131 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR4A16Q8NH70 328 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TECRQ9NZ01 308 aaKnown RBP9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CLN8Q9UBY8 286 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 C16orf97H3BN30 126 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CHEK1O14757 476 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 COX7A1P24310 79 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SCGB2A2Q13296 93 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SPSB3Q6PJ21 355 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 C1QTNF5Q9BXJ0 243 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 A6NDN8 102 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 VENTXO95231 258 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 GNB1P62873 340 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SPACA3Q8IXA5 215 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PEF1Q9UBV8 284 aaKnown RBP9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ZZEF1O43149 2961 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ADGRG4Q8IZF6 3080 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 APCSP02743 223 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MT-ND6P03923 174 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ARL3P36405 182 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CDKN1BP46527 198 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MRPS11P82912 194 aaKnown RBP9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 HES1Q14469 280 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SFRP2Q96HF1 295 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 COL25A1Q9BXS0 654 aaPredicted RBP9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CDC42EP3Q9UKI2 254 aa9.03□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 C10orf142B7Z368 130 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 COMPP49747 757 aaPredicted RBP9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FAM90A2PQ658T7 463 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LHFPL1Q86WI0 220 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR5P3Q8WZ94 311 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 RAB37Q96AX2 223 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CXXC4Q9H2H0 198 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FASNP49327 2511 aaKnown RBP9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 S1PR2O95136 353 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 AMMECR1LQ6DCA0 310 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SAP30LQ9HAJ7 183 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TNCP24821 2201 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 HIVEP3Q5T1R4 2406 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 AHRRA9YTQ3 701 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CLDN14O95500 239 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IGHV3-48P01763 117 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PRDX2P32119 198 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PPOXP50336 477 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C19orf35Q6ZS72 473 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SELENOHQ8IZQ5 122 aaKnown RBP9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR2T6Q8NHC8 308 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 METRNQ9UJH8 293 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 COX11Q9Y6N1 276 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 NAV2Q8IVL1 2488 aa9.02□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PLXNB1O43157 2135 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LRRC30A6NM36 301 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 HBZP02008 142 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PSG1P11464 419 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 NHLH1Q02575 133 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OCIAD2Q56VL3 154 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR10X1Q8NGY0 326 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PLPPR1Q8TBJ4 325 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 QTRT1Q9BXR0 403 aaKnown RBP9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SH2D2AQ9NP31 389 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 NGBQ9NPG2 151 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ABCA12Q86UK0 2595 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SLC17A3O00476 420 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ISLRO14498 428 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LY6HO94772 140 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 BMI1P35226 326 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ACSM6Q6P461 480 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C10orf35Q96D05 121 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SNRNP40Q96DI7 357 aaKnown RBP9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TPPP3Q9BW30 176 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CST9LQ9H4G1 147 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR2W1Q9Y3N9 320 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRAV30A0A087WSZ9 112 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PFN1P07737 140 aaKnown RBP9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MAS1LP35410 378 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PRRX1P54821 245 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C20orf204Q6ZNR8 217 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PSMG3Q9BT73 122 aaPredicted RBP9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 GLRX2Q9NS18 164 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LRP4O75096 1905 aa9.01□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CSN3P07498 182 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms