RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 C15orf62A8K5M9 175 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 SNURFLB1AK76 121 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 M0QZ24 198 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 SERF1AO75920 110 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 MRPL49Q13405 166 aaKnown RBP7.18□□□□□ -1.26
USP40-203ENST00000427112 ATP6V1FQ16864 119 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 ZNF645Q8N7E2 425 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 Q8TCH9 128 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 NOL4LQ96MY1 436 aaPredicted RBP7.18□□□□□ -1.26
USP40-203ENST00000427112 CLCF1Q9UBD9 225 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 TP53TG5Q9Y2B4 290 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 RNF114Q9Y508 228 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 COL4A2P08572 1712 aa7.18□□□□□ -1.26
USP40-203ENST00000427112 KLRC4-KLRK1H3BQV0 150 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 BMPR1BO00238 502 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 MMP23AO75900 390 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 CECR9P0C854 216 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 PMCHL1Q16048 86 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 MSMPQ1L6U9 139 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 LCN12Q6JVE5 192 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 PQLC2Q6ZP29 291 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 LINC01551Q86U37 167 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 FDCSPQ8NFU4 85 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 STARD4Q96DR4 205 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 CCL13Q99616 98 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 CELSR1Q9NYQ6 3014 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 KMT2EQ8IZD2 1858 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 SPINT2O43291 252 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 AMTP48728 403 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 TMEM183BQ1AE95 376 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 DEFB109BQ30KR1 87 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 KRTCAP3Q53RY4 240 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 KCNIP4Q6PIL6 250 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 WDR82Q6UXN9 313 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 TMEM14EPQ6UXP3 125 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 C9orf106Q8NAJ2 232 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 BLNKQ8WV28 456 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 MBD3L1Q8WWY6 194 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 SSBP4Q9BWG4 385 aaPredicted RBP7.17□□□□□ -1.26
USP40-203ENST00000427112 PLEKHA3Q9HB20 300 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 NAT8BQ9UHF3 227 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 WASHC3Q9Y3C0 194 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 USF1P22415 310 aaPredicted RBP7.17□□□□□ -1.26
USP40-203ENST00000427112 PRDX2P32119 198 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 SERF2P84101 59 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 PNRC1Q12796 327 aaPredicted RBP7.17□□□□□ -1.26
USP40-203ENST00000427112 ACOT6Q3I5F7 207 aaPredicted RBP7.17□□□□□ -1.26
USP40-203ENST00000427112 LBHQ53QV2 105 aaPredicted RBP7.17□□□□□ -1.26
USP40-203ENST00000427112 FAM216BQ8N7L0 139 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 ZNF738Q8NE65 137 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 ZNF835Q9Y2P0 537 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 CENPEQ02224 2701 aa7.17□□□□□ -1.26
USP40-203ENST00000427112 ELOA3CA0A087WX78 387 aaPredicted RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 A0A1W2PN81 502 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 MT-CO2P00403 227 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 HOXA6P31267 233 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 ERVK-16P61578 105 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 JOSD1Q15040 202 aaPredicted RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 CMTM2Q8TAZ6 248 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 OR2V2Q96R30 315 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 MGST2Q99735 147 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 TMEM140Q9NV12 185 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 S4R3C0 116 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 A0A1B0GWJ7 208 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 A8MWP6 167 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 FCER1GP30273 86 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 MMDQ15546 238 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 PEAR1Q5VY43 1037 aaPredicted RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 TREML4Q6UXN2 200 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 OR9G1Q8NH87 305 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 H1FXQ92522 213 aaKnown RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 DIRC2Q96SL1 478 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 S1PR3Q99500 378 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 TECRQ9NZ01 308 aaKnown RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 POLR3KQ9Y2Y1 108 aaPredicted RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 HPRT1P00492 218 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 IGKV1-16P04430 117 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 IRF2P14316 349 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 UQCRFS1P47985 274 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 KRTAP27-1Q3LI81 207 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 OR10G8Q8NGN5 311 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 SNIP1Q8TAD8 396 aaKnown RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 ITLN1Q8WWA0 313 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 SFRP2Q96HF1 295 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 GSX1Q9H4S2 264 aaPredicted RBP7.16□□□□□ -1.26
USP40-203ENST00000427112 ENY2Q9NPA8 101 aa7.16□□□□□ -1.26
USP40-203ENST00000427112 TRBV24-1A0A075B6N3 115 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 DUXBA0A1W2PPF3 345 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 RNF212BA8MTL3 300 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 B4DEV8 164 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 M0QZK8 103 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 ENSAO43768 121 aaKnown RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 GGCTO75223 188 aaKnown RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 CA2P00918 260 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 CRISP2P16562 243 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 TSPAN7P41732 249 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 COMPP49747 757 aaPredicted RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 ACP7Q6ZNF0 438 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 Q6ZSR3 168 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 OR2T6Q8NHC8 308 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms