RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SAMD13Q5VXD3 122 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 RPL22L1Q6P5R6 122 aaKnown RBP3.74□□□□□ -1.81
SF3B1-202ENST00000409915 PNKDQ8N490 385 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 STPG4Q8N801 248 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 WDR31Q8NA23 367 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 LFNGQ8NES3 379 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 OR8G5Q8NG78 346 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 OR52L1Q8NGH7 329 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 OR10G4Q8NGN3 311 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 TMEM54Q969K7 222 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 SLC25A44Q96H78 314 aaPredicted RBP3.74□□□□□ -1.81
SF3B1-202ENST00000409915 POM121L2Q96KW2 1035 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 C4orf45Q96LM5 186 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 Q96M85 177 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 ATP5SQ99766 215 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 PLA2G12AQ9BZM1 189 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 LINC00470Q9BZP3 86 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 SLC35B3Q9H1N7 401 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 OR52D1Q9H346 318 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 PLEKHF2Q9H8W4 249 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 ELL3Q9HB65 397 aaPredicted RBP3.74□□□□□ -1.81
SF3B1-202ENST00000409915 TAS2R8Q9NYW2 309 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 ZNF107Q9UII5 783 aaPredicted RBP3.74□□□□□ -1.81
SF3B1-202ENST00000409915 RAB22AQ9UL26 194 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 PPP1R3CQ9UQK1 317 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 SIGLEC7Q9Y286 467 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 SLC25A15Q9Y619 301 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 V9GYY9 64 aa3.74□□□□□ -1.81
SF3B1-202ENST00000409915 ANKRD17O75179 2603 aaKnown RBP3.74□□□□□ -1.81
SF3B1-202ENST00000409915 CADP27708 2225 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 IGHV1-18A0A0C4DH31 117 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 KRTAP23-1A1A580 65 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 SHISA9B4DS77 424 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 M0QXV9 152 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 GOSR2O14653 212 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 RBFOX2O43251 390 aaKnown RBP eCLIP3.73□□□□□ -1.813e-10■■□□□ 14.1
SF3B1-202ENST00000409915 JTBO76095 146 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 NDUFB2O95178 105 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 TRGC2P03986 189 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 OR5G3P0C626 314 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 CECR9P0C854 216 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 PET100P0DJ07 73 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 ESDP10768 282 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 MYOD1P15172 320 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 FAUP35544 74 aaKnown RBP3.73□□□□□ -1.81
SF3B1-202ENST00000409915 CTRLP40313 264 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 LPAR6P43657 344 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 DAP3P51398 398 aaKnown RBP3.73□□□□□ -1.81
SF3B1-202ENST00000409915 SMIM11AP58511 58 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 UBE2NP61088 152 aaKnown RBP3.73□□□□□ -1.81
SF3B1-202ENST00000409915 RPL27P61353 136 aaKnown RBP3.73□□□□□ -1.81
SF3B1-202ENST00000409915 FAM3AP98173 230 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 TGFBR3Q03167 851 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 TMEM249Q2WGJ8 235 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 UBE2NLQ5JXB2 153 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 LDLRAD2Q5SZI1 272 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 FAAP20Q6NZ36 180 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 SMARCD3Q6STE5 483 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 ZNF705AQ6ZN79 300 aaPredicted RBP3.73□□□□□ -1.81
SF3B1-202ENST00000409915 MDP1Q86V88 176 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 CALHM1Q8IU99 346 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 CMTM1Q8IZ96 169 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 LINC01561Q8N1V8 128 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 IQCF1Q8N6M8 205 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 OR4P4Q8NGL7 312 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 OR5B3Q8NH48 314 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 C8orf46Q8TAG6 207 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 SECTM1Q8WVN6 248 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 REEP6Q96HR9 211 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 AQP10Q96PS8 301 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 NICN1Q9BSH3 213 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 TXNIPQ9H3M7 391 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 RERGLQ9H628 205 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 BEX1Q9HBH7 125 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 NRN1Q9NPD7 142 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 TMEM38BQ9NVV0 291 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 FKBP11Q9NYL4 201 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 NAT8Q9UHE5 227 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 ST6GALNAC2Q9UJ37 374 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 FUT9Q9Y231 359 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 IER3IP1Q9Y5U9 82 aa3.73□□□□□ -1.81
SF3B1-202ENST00000409915 MAP1AP78559 2803 aaPredicted RBP3.72□□□□□ -1.81
SF3B1-202ENST00000409915 MYO9AB2RTY4 2548 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 IGHV1-69-2A0A0G2JMI3 117 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 TMEM235A6NFC5 223 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 ZNF705GA8MUZ8 300 aaPredicted RBP3.72□□□□□ -1.81
SF3B1-202ENST00000409915 UMAD1C9J7I0 102 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 E7EQL1 145 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 J3QRE1 110 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 K7EPK0 472 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 M0R036 132 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 M0R129 80 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 DCTN6O00399 190 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 XKRYO14609 159 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 SYNGR3O43761 229 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 FAM106CPP0CH98 169 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 GATA1P15976 413 aaPredicted RBP3.72□□□□□ -1.81
SF3B1-202ENST00000409915 HIST1H1CP16403 213 aaKnown RBP3.72□□□□□ -1.81
SF3B1-202ENST00000409915 CTLA4P16410 223 aa3.72□□□□□ -1.81
SF3B1-202ENST00000409915 S100A7P31151 101 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms