RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NPIPB3Q92617 1050 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 NPCDR1Q9BY65 106 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 TUBA4BQ9H853 241 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 IL36BQ9NZH7 164 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 GPX4P36969 197 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 RTN4RL2Q86UN3 420 aa8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 ZNF479Q96JC4 524 aa8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 ZIC3O60481 467 aa8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 EGR1P18146 543 aa8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 TRAV9-1A0A075B6T8 112 aa8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 TRAV12-3A0A0B4J271 114 aa8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 IL6RP08887 468 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 HIST1H4AP62805 103 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-203ENST00000396595 MYO16Q9Y6X6 1858 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 CTSBP07858 339 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 PF4V1P10720 104 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 GOLT1AQ6ZVE7 132 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 ATP6V0BQ99437 205 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 LPAR2Q9HBW0 351 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 TDRD15B5MCY1 1934 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 hCG_38984A0A1B0GV85 526 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 ATXN7O15265 892 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 SSBP3Q9BWW4 388 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 TRAV14DV4A0A0A6YYC5 116 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 C1QL2Q7Z5L3 287 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 OR5AN1Q8NGI8 311 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 TRAV9-2A0A087WT02 112 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 LOC101059948A0A1B0GTJ6 334 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 MBNL2Q5VZF2 373 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 SPRED2Q7Z698 418 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 PRR7Q8TB68 274 aa8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 RTBDNQ9BSG5 229 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-203ENST00000396595 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A0G2JMM0 328 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A1W2PPB8 328 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 KIR3DP1A8MWS1 328 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 CLEC2AQ6UVW9 174 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 PCSK4Q6UW60 755 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 EAF1Q96JC9 268 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 ZNF318Q5VUA4 2279 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 RBMY1BA6NDE4 496 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 RBMY1EA6NEQ0 496 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 RBMY1DP0C7P1 496 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 RBMY1A1P0DJD3 496 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 RBMY1CP0DJD4 496 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 UCNP55089 124 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 SAP25Q8TEE9 199 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 KLK15Q9H2R5 256 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 GP6Q9HCN6 339 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 ZNF646O15015 1829 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A1W2PQM1 296 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 PAPPA-AS1Q5QFB9 102 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 ST20Q9HBF5 79 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A1B0GTI1 187 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 TMEM170BQ5T4T1 132 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 ATRAIDQ6UW56 229 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 VKORC1L1Q8N0U8 176 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 LEAP2Q969E1 77 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 SDF2L1Q9HCN8 221 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 STRCP1A6NGW2 1772 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 CLEC7AQ9BXN2 247 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 PIKFYVEQ9Y2I7 2098 aa8.69□□□□□ -1.02
LIMCH1-203ENST00000396595 RGPD4Q7Z3J3 1758 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 NPIPB11E5RHQ5 1161 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 HSD52Q0P140 79 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 DDB2Q92466 427 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 LOXL4Q96JB6 756 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 PLXNB2O15031 1838 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 PPIAL4CA0A0B4J2A2 164 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 PPIAL4GP0DN37 164 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 PSG1P11464 419 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 BTCP35070 178 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 ATXN8Q156A1 80 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 CDCP2Q5VXM1 449 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 SFTA2Q6UW10 78 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 LINC00114Q6XXX2 140 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 CLDND2Q8NHS1 167 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 OSR1Q8TAX0 266 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 GTF3AQ92664 365 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 GPR82Q96P67 336 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 COL4A1P02462 1669 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 ANKRD31Q8N7Z5 1873 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 C12orf77C9JDV5 145 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 IGFBP3P17936 291 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 IFI27L2Q9H2X8 130 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 FBLN5Q9UBX5 448 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 EPDR1Q9UM22 224 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 CGB1A6NKQ9 187 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 H3BTX0 84 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 LINC00305Q7Z4B0 112 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 KIR2DL4Q99706 377 aa8.68□□□□□ -1.02
LIMCH1-203ENST00000396595 TRBV7-9A0A0J9YWB2 115 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 FAM181BA6NEQ2 426 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 SYNGR3O43761 229 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 REG1AP05451 166 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 NRN1LQ496H8 165 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 NRN1Q9NPD7 142 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 A0A0G2JLM5 398 aa8.67□□□□□ -1.02
LIMCH1-203ENST00000396595 ATP5LO75964 103 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms