RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.65□□□□□ -1.18
LIMCH1-202ENST00000381753 SRSF12Q8WXF0 261 aaKnown RBP7.65□□□□□ -1.18
LIMCH1-202ENST00000381753 SOD3P08294 240 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 CKAP5Q14008 2032 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 DUX4L9Q6RFH8 374 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 WDR82Q6UXN9 313 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF600Q6ZNG1 722 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 OR5C1Q8NGR4 320 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 MYOZ3Q8TDC0 251 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 HMX2A2RU54 273 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 PRR32B1ATL7 298 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 C22orf46C9J442 243 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 PHOX2AO14813 284 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 LY6G6CO95867 125 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 IGHV4-59P01825 116 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 DCTDP32321 178 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 CAMPP49913 170 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 EFNB2P52799 333 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 COTL1Q14019 142 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 FBLN7Q53RD9 439 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 DMRTA1Q5VZB9 504 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 TMEM200BQ69YZ2 307 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 CIARTQ8N365 385 aaPredicted RBP7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF383Q8NA42 475 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 CTHRC1Q96CG8 243 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 NPVFQ9HCQ7 196 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 FRRS1LQ9P0K9 344 aa7.65□□□□□ -1.19
LIMCH1-202ENST00000381753 LAMA4Q16363 1823 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 IGHV4-61A0A0C4DH41 118 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 SPINK4O60575 86 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 NDUFS7O75251 213 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 PIFOQ8TCI5 191 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 NPIPB3Q92617 1050 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 NAT8BQ9UHF3 227 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF257Q9Y2Q1 563 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 MYOFQ9NZM1 2061 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 FAM223BA6NKX1 122 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 RCC1P18754 421 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 SULT1A1P50225 295 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 C15orf32Q32M92 178 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 FAM223AQ8IWN6 122 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 FOXC2Q99958 501 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 TXNDC17Q9BRA2 123 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 TRAPPC1Q9Y5R8 145 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 CROCCQ5TZA2 2017 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 GPR179Q6PRD1 2367 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 LY6G6EA0A0G2JKS1 128 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 MFNGO00587 321 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 PDZD11Q5EBL8 140 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 MMP24Q9Y5R2 645 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 U3KQA8 63 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 H3BTX0 84 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 M0R3E3 92 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF146Q15072 292 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 OR10C1Q96KK4 312 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 VIRMAQ69YN4 1812 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 SEC16AO15027 2179 aa7.64□□□□□ -1.19
LIMCH1-202ENST00000381753 F8W735 103 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 TGFBR1P36897 503 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 BET1LQ9NYM9 111 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 IL36RNQ9UBH0 155 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 IGLL5B9A064 214 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 IGHV4-39P01824 125 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 FUT5Q11128 374 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 SIGLEC15Q6ZMC9 328 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 KCNS1Q96KK3 526 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 SEC11CQ9BY50 192 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 SRIP30626 198 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 HMGA2P52926 109 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 ELOBQ15370 118 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 KIR2DL4Q99706 377 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 RARRES2Q99969 163 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 VPS25Q9BRG1 176 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 C1QTNF5Q9BXJ0 243 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 SRD5A3Q9H8P0 318 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 AKAP6Q13023 2319 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 TGFBR3LH3BV60 316 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 HSPB1P04792 205 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 STAG3L2P0CL84 134 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 DEFB131AP59861 70 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 FABP5Q01469 135 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 ZFAND6Q6FIF0 208 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 TMEM88Q6PEY1 159 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 ASB13Q8WXK3 278 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 M0R381 172 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 EIF3GO75821 320 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 CSN3P07498 182 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 LYL1P12980 280 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 POLR2GP62487 172 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 HLA-DRB5Q30154 266 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 GVQW1Q8N7I0 195 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 OR11H4Q8NGC9 324 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 TOLLIPQ9H0E2 274 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 OPN4Q9UHM6 478 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 COL4A1P02462 1669 aa7.63□□□□□ -1.19
LIMCH1-202ENST00000381753 UCP1P25874 307 aa7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 ZNF837Q96EG3 531 aaPredicted RBP7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 NXF2Q9GZY0 626 aaKnown RBP7.62□□□□□ -1.19
LIMCH1-202ENST00000381753 MARCH11A6NNE9 402 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms