RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NANOS1Q8WY41 292 aaKnown RBP15.22■□□□□ 0.03
CCDC3-201ENST00000378825 HINT2Q9BX68 163 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 TMEM140Q9NV12 185 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 TCF19Q9Y242 345 aa15.22■□□□□ 0.03
CCDC3-201ENST00000378825 TCF21O43680 179 aa15.21■□□□□ 0.03
CCDC3-201ENST00000378825 ZNF883P0CG24 379 aa15.21■□□□□ 0.03
CCDC3-201ENST00000378825 HTD2P86397 168 aa15.21■□□□□ 0.03
CCDC3-201ENST00000378825 HES3Q5TGS1 186 aa15.21■□□□□ 0.03
CCDC3-201ENST00000378825 NHLRC2Q8NBF2 726 aa15.21■□□□□ 0.03
CCDC3-201ENST00000378825 CNOT1A5YKK6 2376 aaKnown RBP15.21■□□□□ 0.02
CCDC3-201ENST00000378825 ARG2P78540 354 aa15.21■□□□□ 0.02
CCDC3-201ENST00000378825 SPATA45Q537H7 98 aa15.21■□□□□ 0.02
CCDC3-201ENST00000378825 C11orf42Q8N5U0 333 aa15.21■□□□□ 0.02
CCDC3-201ENST00000378825 C21orf140B9A014 251 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 MPDU1O75352 247 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 RAB7AP51149 207 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 ZNF83P51522 516 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 RELQ04864 619 aaPredicted RBP15.2■□□□□ 0.02
CCDC3-201ENST00000378825 A0A1W2PS18 150 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 SIAH2O43255 324 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 OR10J4P0C629 311 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 Q0VG73 95 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 GAGE1Q13065 139 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 PSG5Q15238 335 aa15.2■□□□□ 0.02
CCDC3-201ENST00000378825 IGHV3OR15-7A0A075B7D8 119 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 CTRLP40313 264 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 LCN12Q6JVE5 192 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 SFXN3Q9BWM7 321 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 NPVFQ9HCQ7 196 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 DNAJC4Q9NNZ3 241 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 M0R296 226 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 NDUFB8O95169 186 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 SRIP30626 198 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 CHRNB4P30926 498 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 MLANAQ16655 118 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 TMEM136Q6ZRR5 245 aa15.19■□□□□ 0.02
CCDC3-201ENST00000378825 MORN2Q502X0 79 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 SPINT2O43291 252 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 ZNF253O75346 499 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 CA2P00918 260 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 GNG4P50150 75 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 SPRNQ5BIV9 151 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 TEPPQ6URK8 271 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 C1orf174Q8IYL3 243 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 C11orf52Q96A22 123 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 ZNF503Q96F45 646 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 OPN3Q9H1Y3 402 aaPredicted RBP15.18■□□□□ 0.02
CCDC3-201ENST00000378825 ZNF586Q9NXT0 402 aa15.18■□□□□ 0.02
CCDC3-201ENST00000378825 TRGV10A0A0A0MS01 117 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 HELTA6NFD8 242 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 A8MXE2 369 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 NTF3P20783 257 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 TMPRSS3P57727 454 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 RHOBP62745 196 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 SRSF6Q13247 344 aaKnown RBP15.17■□□□□ 0.02
CCDC3-201ENST00000378825 MRPL49Q13405 166 aaKnown RBP15.17■□□□□ 0.02
CCDC3-201ENST00000378825 GABRA6Q16445 453 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 AARDQ4LEZ3 155 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 ZNRF1Q8ND25 227 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 FAM168AQ92567 244 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 LINC00479Q96M42 142 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 SSBP3Q9BWW4 388 aaPredicted RBP15.17■□□□□ 0.02
CCDC3-201ENST00000378825 DUSP13Q9UII6 198 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 IGKV1OR2-108A0A075B7D4 117 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 BMPR1BO00238 502 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 HYPMO75409 117 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 C3orf79P0CE67 100 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 MDS2Q8NDY4 140 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 LRRC29Q8WV35 223 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 STARD4Q96DR4 205 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 GCM1Q9NP62 436 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 TP73-AS1Q9UF72 201 aa15.17■□□□□ 0.02
CCDC3-201ENST00000378825 GGTLC3B5MD39 225 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 KLRC4-KLRK1H3BQV0 150 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 TIMM8AO60220 97 aaPredicted RBP15.16■□□□□ 0.02
CCDC3-201ENST00000378825 LINC00869P0C866 280 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 NIT1Q86X76 327 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 TCTEX1D1Q8N7M0 179 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 TXNDC17Q9BRA2 123 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 IFI27L2Q9H2X8 130 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 KLF13Q9Y2Y9 288 aaPredicted RBP15.16■□□□□ 0.02
CCDC3-201ENST00000378825 C9JCJ5 164 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 MGST1P10620 155 aaKnown RBP15.16■□□□□ 0.02
CCDC3-201ENST00000378825 ERVK-16P61578 105 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 CX3CL1P78423 397 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 COL5A1-AS1Q5SY13 56 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 FAM214BQ7L5A3 538 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 FAM90A1Q86YD7 464 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 RNF2Q99496 336 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 GNB1LQ9BYB4 327 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 SERTAD4Q9NUC0 356 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 NPY1RP25929 384 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 SUMO1P63165 101 aaKnown RBP15.16■□□□□ 0.02
CCDC3-201ENST00000378825 ALKBH2Q6NS38 261 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 WDR31Q8NA23 367 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 SLC35E1Q96K37 410 aa15.16■□□□□ 0.02
CCDC3-201ENST00000378825 MAP1BP46821 2468 aaKnown RBP15.15■□□□□ 0.02
CCDC3-201ENST00000378825 YLPM1P49750 1951 aaKnown RBP15.15■□□□□ 0.02
CCDC3-201ENST00000378825 IGKV1D-17A0A075B6S4 117 aa15.15■□□□□ 0.02
CCDC3-201ENST00000378825 IGLC2P0DOY2 106 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms