RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 ECSCRQ19T08 205 aa9.04□□□□□ -0.96
SVIP-201ENST00000354193 OR4F5Q8NH21 305 aa9.04□□□□□ -0.96
SVIP-201ENST00000354193 VSTM2AQ8TAG5 236 aa9.04□□□□□ -0.96
SVIP-201ENST00000354193 OR4F4Q96R69 305 aa9.04□□□□□ -0.96
SVIP-201ENST00000354193 PDLIM4P50479 330 aa9.04□□□□□ -0.96
SVIP-201ENST00000354193 SP5Q6BEB4 398 aaPredicted RBP9.04□□□□□ -0.96
SVIP-201ENST00000354193 HSPB7Q9UBY9 170 aa9.04□□□□□ -0.96
SVIP-201ENST00000354193 AMMECR1Q9Y4X0 333 aaPredicted RBP9.04□□□□□ -0.96
SVIP-201ENST00000354193 CYB5BO43169 146 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 RNF224P0DH78 156 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 FAM78BQ5VT40 261 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 KIR3DL3Q8N743 410 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 ZNF430Q9H8G1 570 aaPredicted RBP9.03□□□□□ -0.96
SVIP-201ENST00000354193 SUB1P53999 127 aaKnown RBP eCLIP9.03□□□□□ -0.96
SVIP-201ENST00000354193 B2MP61769 119 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 KLF17Q5JT82 389 aaPredicted RBP9.03□□□□□ -0.96
SVIP-201ENST00000354193 SVBPQ8N300 66 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 OR10J1P30954 320 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 ACSM6Q6P461 480 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 TCTEX1D1Q8N7M0 179 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 TMEM218A2RU14 115 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 H0YJW9 148 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 MC5RP33032 325 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 RELBQ01201 579 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 VMO1Q7Z5L0 202 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 CLDND2Q8NHS1 167 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 RITA1Q96K30 269 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 NABP2Q9BQ15 211 aa9.03□□□□□ -0.96
SVIP-201ENST00000354193 IFNA1P01562 189 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 IGHV3-23P01764 117 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 HBE1P02100 147 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 HLA-DRB5Q30154 266 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 TMEM219Q86XT9 240 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 SAT2Q96F10 170 aaPredicted RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 PIMREGQ9BSJ6 248 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 ACTR3CQ9C0K3 210 aaPredicted RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 GNB4Q9HAV0 340 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 MFSD2BA6NFX1 497 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 H3BTX0 84 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 SMAD7O15105 426 aaKnown RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 IGHV2-70P01814 119 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 DANCRP0C864 163 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 ATRAIDQ6UW56 229 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 KDF1Q8NAX2 398 aaPredicted RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 OR2T6Q8NHC8 308 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 NPIPB3Q92617 1050 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 WDR61Q9GZS3 305 aaKnown RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 C7orf69Q9H7B7 122 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 TRAV40A0A0B4J280 105 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 C15orf61A6NNL5 157 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 MOSP00540 346 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 OR10J4P0C629 311 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 CDC34P49427 236 aaPredicted RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 AKR1D1P51857 326 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 RND2P52198 227 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 ACOT6Q3I5F7 207 aaPredicted RBP9.02□□□□□ -0.97
SVIP-201ENST00000354193 CBLN2Q8IUK8 224 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 FKBP11Q9NYL4 201 aa9.02□□□□□ -0.97
SVIP-201ENST00000354193 FAM90A26D6RGX4 464 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 TGFAP01135 160 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 SPP1P10451 314 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 ADIRFQ15847 76 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 IGHV1-3A0A0C4DH29 117 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 UPK2O00526 184 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 IGFBP2P18065 325 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 RAB5CP51148 216 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 HSD17B13Q7Z5P4 300 aaPredicted RBP9.01□□□□□ -0.97
SVIP-201ENST00000354193 OR4P4Q8NGL7 312 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 OSR1Q8TAX0 266 aaPredicted RBP9.01□□□□□ -0.97
SVIP-201ENST00000354193 ISOC2Q96AB3 205 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 PARP11Q9NR21 331 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 MED9Q9NWA0 146 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 AUP1Q9Y679 476 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 PXMP4Q9Y6I8 212 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 RAB24Q969Q5 203 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 GSX1Q9H4S2 264 aaPredicted RBP9.01□□□□□ -0.97
SVIP-201ENST00000354193 TEX50A0A1B0GTY4 177 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 TMEM11P17152 192 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 USF1P22415 310 aaPredicted RBP9.01□□□□□ -0.97
SVIP-201ENST00000354193 RUSC1-AS1Q66K80 236 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 TEPPQ6URK8 271 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 IL34Q6ZMJ4 242 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 HAPLN4Q86UW8 402 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 MS4A10Q96PG2 267 aa9.01□□□□□ -0.97
SVIP-201ENST00000354193 NKX6-2Q9C056 277 aaPredicted RBP9.01□□□□□ -0.97
SVIP-201ENST00000354193 RBFOX3A6NFN3 312 aa9□□□□□ -0.97
SVIP-201ENST00000354193 BUB1B-PAK6H3BSN5 160 aa9□□□□□ -0.97
SVIP-201ENST00000354193 MMP9P14780 707 aa9□□□□□ -0.97
SVIP-201ENST00000354193 PSMB3P49720 205 aa9□□□□□ -0.97
SVIP-201ENST00000354193 ZNF436-AS1Q8NC38 126 aaPredicted RBP9□□□□□ -0.97
SVIP-201ENST00000354193 RCC1LQ96I51 464 aaKnown RBP9□□□□□ -0.97
SVIP-201ENST00000354193 GINS3Q9BRX5 216 aa9□□□□□ -0.97
SVIP-201ENST00000354193 NPVFQ9HCQ7 196 aa9□□□□□ -0.97
SVIP-201ENST00000354193 FCN1O00602 326 aa9□□□□□ -0.97
SVIP-201ENST00000354193 PAGE4O60829 102 aa9□□□□□ -0.97
SVIP-201ENST00000354193 IGHV4-39P01824 125 aa9□□□□□ -0.97
SVIP-201ENST00000354193 FAM157CP0CG43 387 aa9□□□□□ -0.97
SVIP-201ENST00000354193 ZFP36P26651 326 aaKnown RBP9□□□□□ -0.97
SVIP-201ENST00000354193 MRPL41Q8IXM3 137 aaKnown RBP9□□□□□ -0.97
SVIP-201ENST00000354193 NECAP1Q8NC96 275 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms