RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 VWC2LB2RUY7 222 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 VENTXO95231 258 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 LGALS4P56470 323 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 SERF2P84101 59 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 PSG5Q15238 335 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 SSX2Q16385 188 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 TBX15Q96SF7 602 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 VSIRQ9H7M9 311 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 METTL1Q9UBP6 276 aaKnown RBP10.76□□□□□ -0.69
HMGB1-202ENST00000339872 TIMM9Q9Y5J7 89 aa10.76□□□□□ -0.69
HMGB1-202ENST00000339872 CRYBG3Q68DQ2 2970 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 COL8A1P27658 744 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 SNCAP37840 140 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 DLK1P80370 383 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 MRGPRG-AS1Q2M3A8 158 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 TUSC1Q2TAM9 212 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 DPPA3Q6W0C5 159 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 CFHR4Q92496 578 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 GGACTQ9BVM4 153 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 NPCDR1Q9BY65 106 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 FAM96BQ9Y3D0 163 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 A0A1W2PN81 502 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 CGB1A6NKQ9 187 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 IGKV1D-33P01593 117 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 IGKV1-33P01594 117 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 H2AFB1P0C5Y9 115 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 CHRNA7P36544 502 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 TNXAQ16473 311 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 MMD2Q8IY49 270 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 TREM1Q9NP99 234 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 RPRMQ9NS64 109 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 WDR83OSQ9Y284 106 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 SIGLEC9Q9Y336 463 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 MED13LQ71F56 2210 aa10.75□□□□□ -0.69
HMGB1-202ENST00000339872 LRRK2Q5S007 2527 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 ACTL6BO94805 426 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 CRYGBP07316 175 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 MDKP21741 143 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-202ENST00000339872 CD24P25063 80 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 ERHP84090 104 aaKnown RBP10.74□□□□□ -0.69
HMGB1-202ENST00000339872 PRSS8Q16651 343 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 MINOS1Q5TGZ0 78 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 ZNF787Q6DD87 383 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 ZNF709Q8N972 641 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 FBXL15Q9H469 300 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 MINOS1-NBL1R4GNA1 71 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 ABCA2Q9BZC7 2435 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 A0A1B0GW64 132 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 RNASE2P10153 161 aaKnown RBP10.74□□□□□ -0.69
HMGB1-202ENST00000339872 GNB1P62873 340 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 HABP2Q14520 560 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-202ENST00000339872 PLGLAQ15195 96 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 MMDQ15546 238 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 BSXQ3C1V8 233 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 C2orf83Q53S99 150 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 TMEM41BQ5BJD5 291 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 CCDC144NLQ6NUI1 221 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 TREML4Q6UXN2 200 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 CENPVQ7Z7K6 275 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-202ENST00000339872 PPP1R27Q86WC6 154 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 DYNAPQ8N1N2 210 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 SFT2D1Q8WV19 159 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 C17orf50Q8WW18 174 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 RNF5Q99942 180 aa10.74□□□□□ -0.69
HMGB1-202ENST00000339872 POLR3KQ9Y2Y1 108 aaPredicted RBP10.74□□□□□ -0.69
HMGB1-202ENST00000339872 C17orf112F2Z3M2 114 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 UBE2E1P51965 193 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 WT1-ASQ06250 92 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 HES1Q14469 280 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 ARSJQ5FYB0 599 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-202ENST00000339872 ACSM6Q6P461 480 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 CCDC28AQ8IWP9 274 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 COMMD1Q8N668 190 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 INS-IGF2F8WCM5 200 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 PLXNB1O43157 2135 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 RPL27AP46776 148 aaKnown RBP10.73□□□□□ -0.69
HMGB1-202ENST00000339872 RAB2AP61019 212 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 FFAR4Q5NUL3 377 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 SPSB3Q6PJ21 355 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 LFNGQ8NES3 379 aa10.73□□□□□ -0.69
HMGB1-202ENST00000339872 KMT2BQ9UMN6 2715 aaPredicted RBP10.73□□□□□ -0.69
HMGB1-202ENST00000339872 OOSP1A8MZH6 123 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 MPDU1O75352 247 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 MOSP00540 346 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 SNRNP70P08621 437 aaKnown RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 OR13C7P0DN81 318 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 PAX1P15863 534 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 ATP5IP56385 69 aaPredicted RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 NPVFQ9HCQ7 196 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 TBL2Q9Y4P3 447 aaKnown RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 SPG11Q96JI7 2443 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 TMEM218A2RU14 115 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 NBR2O15453 112 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 REG1AP05451 166 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 MAS1LP35410 378 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 COMPP49747 757 aaPredicted RBP10.72□□□□□ -0.69
HMGB1-202ENST00000339872 DSCR9P59020 149 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 CCL20P78556 96 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 ZNF726P1Q15940 193 aa10.72□□□□□ -0.69
HMGB1-202ENST00000339872 GUK1Q16774 197 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms