RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 USP9XQ93008 2570 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CA2P00918 260 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 ZNF497Q6ZNH5 498 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 C20orf204Q6ZNR8 217 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 MIR17HGQ75NE6 70 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 TMEM256Q8N2U0 113 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 PERPQ96FX8 193 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 IL36BQ9NZH7 164 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 HIVEP3Q5T1R4 2406 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CGAP01215 116 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 OR9G9P0C7N8 305 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 LINC00869P0C866 280 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CD33P20138 364 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 RPL27AP46776 148 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 SSX8Q7RTT4 187 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 OR2T6Q8NHC8 308 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 IGKV1-6A0A0C4DH72 117 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 FAM53AQ6NSI3 398 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 C9orf106Q8NAJ2 232 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 ZNF703Q9H7S9 590 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 LOC389332A0A1B0GUA5 103 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 NCBP2LA6PVI3 153 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 K7ESF4 209 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 P01737 135 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 LINC00205P59089 165 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 RPL11P62913 178 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 GTF3AQ92664 365 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 UQCR10Q9UDW1 63 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 KLF7O75840 302 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CRYABP02511 175 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 FAM214BQ7L5A3 538 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 S100A7AQ86SG5 101 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 MRPL20Q9BYC9 149 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 OR4A8P0C604 315 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 PRB4P10163 310 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CD82P27701 267 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CLDN18P56856 261 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 MMD2Q8IY49 270 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 NPIPB3Q92617 1050 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 HSPB7Q9UBY9 170 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 COLQQ9Y215 455 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 IGKV3D-15A0A087WSY6 115 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 PGPA6NDG6 321 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 PPIHO43447 177 aaKnown RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 CFPP27918 469 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 VWA1Q6PCB0 445 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 OCC1Q8TAD7 63 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 DERL1Q9BUN8 251 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 WNT10AQ9GZT5 417 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 TNFRSF19Q9NS68 423 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 SEMA5BQ9P283 1151 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 SLC25A10Q9UBX3 287 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-201ENST00000249837 PTPRBP23467 1997 aa3.87□□□□□ -1.79
VPS13C-201ENST00000249837 FAM90A27PA6NNH2 459 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 SLC25A17O43808 307 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 FAM87AP0C7U9 286 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 C8orf88P0DMB2 117 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 IGFBP2P18065 325 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 OR4A47Q6IF82 309 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 C14orf144Q96I85 54 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 RNASE7Q9H1E1 156 aaKnown RBP3.86□□□□□ -1.79
VPS13C-201ENST00000249837 LRP4O75096 1905 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 PSPNO60542 156 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 SMPD2O60906 423 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 CLEC3BP05452 202 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 TAS2R60P59551 318 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 SPATA45Q537H7 98 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 NDFIP1Q9BT67 221 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 TRAV1-1A0A0B4J248 108 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 A0A1W2PN81 502 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 GNB2P62879 340 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 FAM90A2PQ658T7 463 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 SLC35E4Q6ICL7 350 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 LHFPL4Q7Z7J7 247 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 FAM216BQ8N7L0 139 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 FAM222BQ8WU58 562 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 INSIG2Q9Y5U4 225 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 ACP1P24666 158 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 NTF4P34130 210 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 UQCRFS1P47985 274 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 PRRX1P54821 245 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 RPP25LQ8N5L8 163 aaKnown RBP3.86□□□□□ -1.79
VPS13C-201ENST00000249837 OR9G1Q8NH87 305 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 WDYHV1Q96HA8 205 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 TRAV3A0A0B4J244 114 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 TFPI2P48307 235 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 PEAR1Q5VY43 1037 aaPredicted RBP3.86□□□□□ -1.79
VPS13C-201ENST00000249837 CDPF1Q6NVV7 123 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 FAM19A2Q8N3H0 131 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 TMEM170AQ8WVE7 144 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 ATG2AQ2TAZ0 1938 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 MPDU1O75352 247 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 COL8A1P27658 744 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 OR4F17Q8NGA8 305 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 SPRR3Q9UBC9 169 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 C9orf172C9J069 976 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 ANOS1P23352 680 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 RPL8P62917 257 aaKnown RBP3.86□□□□□ -1.79
VPS13C-201ENST00000249837 EXPH5Q8NEV8 1989 aa3.86□□□□□ -1.79
VPS13C-201ENST00000249837 SIAH2O43255 324 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms