RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PRR20DP86480 221 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 PRR20BP86481 221 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 PRR20AP86496 221 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 TNFAIP6P98066 277 aaPredicted RBP15.35■□□□□ 0.05
CPSF3-201ENST00000238112 C11orf52Q96A22 123 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 IL36BQ9NZH7 164 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 A0A1B0GV90 55 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 C9JCJ5 164 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 POU2AF1Q16633 256 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 STUMQ69YW2 141 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 TMEM256Q8N2U0 113 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 ZNF439Q8NDP4 499 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 LRFN3Q9BTN0 628 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 GCM1Q9NP62 436 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 NBEAQ8NFP9 2946 aa15.35■□□□□ 0.05
CPSF3-201ENST00000238112 TRAV9-1A0A075B6T8 112 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 K7EN84 100 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 NDUFAF3Q9BU61 184 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 FKBP11Q9NYL4 201 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 BDP1A6H8Y1 2624 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 A0A1B0GUS0 222 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 SCGB1D1O95968 90 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 RTL8BQ17RB0 113 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 HLA-DRB5Q30154 266 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 C3orf36Q3SXR2 165 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 MIR17HGQ75NE6 70 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 ZCCHC14Q8WYQ9 949 aaKnown RBP15.34■□□□□ 0.05
CPSF3-201ENST00000238112 GAFA1Q96PS6 74 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 ZNF257Q9Y2Q1 563 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 LY96Q9Y6Y9 160 aa15.34■□□□□ 0.05
CPSF3-201ENST00000238112 SLC17A3O00476 420 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 OR4A8P0C604 315 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 AREGP15514 252 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 PRCDQ00LT1 54 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 PSG5Q15238 335 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 LBHQ53QV2 105 aaPredicted RBP15.33■□□□□ 0.05
CPSF3-201ENST00000238112 CCL13Q99616 98 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 SLC25A10Q9UBX3 287 aaPredicted RBP15.33■□□□□ 0.05
CPSF3-201ENST00000238112 IL19Q9UHD0 177 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 SLC45A2Q9UMX9 530 aa15.33■□□□□ 0.05
CPSF3-201ENST00000238112 LINC00869P0C866 280 aa15.33■□□□□ 0.04
CPSF3-201ENST00000238112 SSX2Q16385 188 aa15.33■□□□□ 0.04
CPSF3-201ENST00000238112 EAF1Q96JC9 268 aaPredicted RBP15.33■□□□□ 0.04
CPSF3-201ENST00000238112 TMEM167BQ9NRX6 74 aa15.33■□□□□ 0.04
CPSF3-201ENST00000238112 SLC35D1Q9NTN3 355 aa15.33■□□□□ 0.04
CPSF3-201ENST00000238112 ARL2-SNX15V9GYD0 113 aa15.33■□□□□ 0.04
CPSF3-201ENST00000238112 UPK2O00526 184 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 IGHV1-46P01743 117 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 CBLN1P23435 193 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 TNFSF4P23510 183 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 RPRMLQ8N4K4 120 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 FAM216BQ8N7L0 139 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 CMTM2Q8TAZ6 248 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 FAM122AQ96E09 287 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 MS4A10Q96PG2 267 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 NABP2Q9BQ15 211 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 SPENQ96T58 3664 aaKnown RBP15.32■□□□□ 0.04
CPSF3-201ENST00000238112 GRIFINA4D1Z8 144 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 COL8A2P25067 703 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 ERVFC1-1P60608 527 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 SSTP61278 116 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 USF2Q15853 346 aaPredicted RBP15.32■□□□□ 0.04
CPSF3-201ENST00000238112 BEND2Q8NDZ0 799 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 FAM215AQ9Y5M1 114 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 SVILO95425 2214 aa15.32■□□□□ 0.04
CPSF3-201ENST00000238112 CADP27708 2225 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 TM4SF5O14894 197 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 MMP23AO75900 390 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 IGKV1-16P04430 117 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 CT45A6P0DMU7 189 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 CT45A5P0DMU8 189 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 CT45A7P0DMV0 189 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 RPEL1Q2QD12 228 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 TMEM30BQ3MIR4 351 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 TECRQ9NZ01 308 aaKnown RBP15.31■□□□□ 0.04
CPSF3-201ENST00000238112 NUPR1O60356 82 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 CEACAM4O75871 244 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 IRF2P14316 349 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 GNG4P50150 75 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 TAS2R60P59551 318 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 SLC25A48Q6ZT89 311 aaKnown RBP15.31■□□□□ 0.04
CPSF3-201ENST00000238112 SLC35E1Q96K37 410 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 C2orf88Q9BSF0 95 aa15.31■□□□□ 0.04
CPSF3-201ENST00000238112 MRPL18Q9H0U6 180 aaKnown RBP15.31■□□□□ 0.04
CPSF3-201ENST00000238112 RPUSD1Q9UJJ7 312 aaKnown RBP15.31■□□□□ 0.04
CPSF3-201ENST00000238112 HELTA6NFD8 242 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 SNRPCP09234 159 aaKnown RBP15.3■□□□□ 0.04
CPSF3-201ENST00000238112 SELENOTP62341 195 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 C1orf185Q5T7R7 199 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 ZNF788Q6ZQV5 615 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 MOB3BQ86TA1 216 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 OR1L6Q8NGR2 347 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 LINC00574Q9H8X3 128 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 NAGKQ9UJ70 344 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 DSCAMO60469 2012 aa15.3■□□□□ 0.04
CPSF3-201ENST00000238112 TEX50A0A1B0GTY4 177 aa15.29■□□□□ 0.04
CPSF3-201ENST00000238112 SRRM4A7MD48 611 aaKnown RBP15.29■□□□□ 0.04
CPSF3-201ENST00000238112 OR7C2O60412 319 aa15.29■□□□□ 0.04
CPSF3-201ENST00000238112 LGALS4P56470 323 aa15.29■□□□□ 0.04
CPSF3-201ENST00000238112 RAB4BP61018 213 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms