RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ZNF695Q8IW36 515 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 OR5B3Q8NH48 314 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 ZFP57Q9NU63 452 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 TBC1D24Q9ULP9 559 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 FOXA2Q9Y261 457 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 ZNF257Q9Y2Q1 563 aa13.01□□□□□ -0.33
SHKBP1-219ENST00000599575 IGLV1-40P01703 118 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 TCRBP04435 133 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 RPL27AP46776 148 aaKnown RBP13□□□□□ -0.33
SHKBP1-219ENST00000599575 AKR1C2P52895 323 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 TMEM187Q14656 261 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 ZNF429Q86V71 674 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 LGI3Q8N145 548 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 LRTM2Q8N967 370 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 LFNGQ8NES3 379 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 GRPEL2Q8TAA5 225 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 LSM10Q969L4 123 aaKnown RBP13□□□□□ -0.33
SHKBP1-219ENST00000599575 PALMDQ9NP74 551 aa13□□□□□ -0.33
SHKBP1-219ENST00000599575 A0A0B4J2A0 478 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 MSGN1A6NI15 193 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 P0C879 139 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 RAB25P57735 213 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 CXorf66Q5JRM2 361 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 UNQ5815/PRO19632Q6UWF5 114 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 NDUFA11Q86Y39 141 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 MRPL41Q8IXM3 137 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 OR4A16Q8NH70 328 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 PHB2Q99623 299 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 SLA2Q9H6Q3 261 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 TMEM14BQ9NUH8 114 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 SHPKQ9UHJ6 478 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 LINC00527Q9UJ94 153 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 FBXO7Q9Y3I1 522 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 TSSC4Q9Y5U2 329 aaPredicted RBP12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 WSB1Q9Y6I7 421 aa12.99□□□□□ -0.33
SHKBP1-219ENST00000599575 C15orf61A6NNL5 157 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 G3V318 75 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 SFT2D2O95562 160 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 VAMP1P23763 118 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 PSMB8P28062 276 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 MECP2P51608 486 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 KRTAP10-3P60369 221 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 ECSCRQ19T08 205 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 TMEM268Q5VZI3 342 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 TMEM65Q6PI78 240 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 ZNF329Q86UD4 541 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 SELENOHQ8IZQ5 122 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 DUSP18Q8NEJ0 188 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 OR1L8Q8NGR8 309 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 RNASE11Q8TAA1 199 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 ENKURQ8TC29 256 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 QTRT1Q9BXR0 403 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 C20orf85Q9H1P6 137 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 ANK2Q01484 3957 aa12.98□□□□□ -0.33
SHKBP1-219ENST00000599575 DHFRP00374 187 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 IGKV1-5P01602 117 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 OR4E1P0C645 316 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 OR2B8PP59922 312 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 IFITM3Q01628 133 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 PPP1R1AQ13522 171 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 AARDQ4LEZ3 155 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 TTC9CQ8N5M4 171 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 FAM110DQ8TAY7 271 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 FAM103A1Q9BTL3 118 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 NUDT15Q9NV35 164 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 COA4Q9NYJ1 87 aa12.97□□□□□ -0.33
SHKBP1-219ENST00000599575 A0A1W2PN81 502 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 TCRBV4S1A1TA0A5B7 111 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 NPIPB5A8MRT5 1133 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 M0QZ24 198 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 DUS4LO95620 317 aaKnown RBP12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 HLA-AP01891 365 aaKnown RBP12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 OR9G9P0C7N8 305 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 TRAPPC2P0DI81 140 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 TRAPPC2BP0DI82 140 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 CD28P10747 220 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 CHRNA7P36544 502 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 CDX1P47902 265 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 C2orf68Q2NKX9 166 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 LYG2Q86SG7 212 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 LHFPL5Q8TAF8 219 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 MYOZ3Q8TDC0 251 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 NDUFA4L2Q9NRX3 87 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 TMED3Q9Y3Q3 217 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 OR51B2Q9Y5P1 312 aa12.96□□□□□ -0.33
SHKBP1-219ENST00000599575 TRAV3A0A0B4J244 114 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 TEX50A0A1B0GTY4 177 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 C9orf170A2RU37 121 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 TEX22C9J3V5 150 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 CYB5BO43169 146 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 RBMXL2O75526 392 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 CRYGCP07315 174 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 SLC25A6P12236 298 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 RAB9AP51151 201 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 HSPE1P61604 102 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 DHRS2Q13268 280 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 C4orf46Q504U0 113 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 TCTEX1D4Q5JR98 221 aa12.95□□□□□ -0.34
SHKBP1-219ENST00000599575 SLC35G3Q8N808 338 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms