RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 DEFB136Q30KP8 78 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 C10orf55Q5SWW7 151 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 FOXB2Q5VYV0 432 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 TOMM5Q8N4H5 51 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 OR51S1Q8NGJ8 323 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 OR1N2Q8NGR9 330 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 OR13C8Q8NGS7 320 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 DEDD2Q8WXF8 326 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 RCC1LQ96I51 464 aaKnown RBP11.67□□□□□ -0.54
UPF1-202ENST00000594243 SCGB3A2Q96PL1 93 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 DUX3Q96PT4 197 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 FYTTD1Q96QD9 318 aaKnown RBP11.67□□□□□ -0.54
UPF1-202ENST00000594243 OR5B12Q96R08 314 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 COMMD5Q9GZQ3 224 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 MCUBQ9NWR8 336 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 SLC2A8Q9NY64 477 aa11.67□□□□□ -0.54
UPF1-202ENST00000594243 C3orf85A0A1B0GTC6 90 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 C13orf42A0A1B0GVH6 325 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 H0Y980 276 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 SNAPC5O75971 98 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 SAMD5Q5TGI4 173 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 ADAD2Q8NCV1 583 aaKnown RBP11.66□□□□□ -0.54
UPF1-202ENST00000594243 DPF1Q92782 380 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 MRGPRFQ96AM1 343 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 USMG5Q96IX5 58 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 TSC22D3Q99576 134 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 MCRIP2Q9BUT9 160 aaKnown RBP11.66□□□□□ -0.54
UPF1-202ENST00000594243 FKBP11Q9NYL4 201 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 GPR132Q9UNW8 380 aa11.66□□□□□ -0.54
UPF1-202ENST00000594243 TRAV3A0A0B4J244 114 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 HMX3A6NHT5 357 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 TEX22C9J3V5 150 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 E7EUB6 86 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 G3V4G9 280 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 WIPF1O43516 503 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 ATG12O94817 140 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 DHFRP00374 187 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 LGALS1P09382 135 aaKnown RBP11.65□□□□□ -0.54
UPF1-202ENST00000594243 OR8U8P0C7N1 319 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 IGLL1P15814 213 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 RAB25P57735 213 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 ZNF616Q08AN1 781 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 KLF9Q13886 244 aaPredicted RBP11.65□□□□□ -0.54
UPF1-202ENST00000594243 OXLD1Q5BKU9 147 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 THOC7Q6I9Y2 204 aaKnown RBP11.65□□□□□ -0.54
UPF1-202ENST00000594243 GDPD1Q8N9F7 314 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 TRIM63Q969Q1 353 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 SRSF8Q9BRL6 282 aaKnown RBP11.65□□□□□ -0.54
UPF1-202ENST00000594243 RTBDNQ9BSG5 229 aaPredicted RBP11.65□□□□□ -0.54
UPF1-202ENST00000594243 GPR61Q9BZJ8 451 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 ZNF257Q9Y2Q1 563 aa11.65□□□□□ -0.54
UPF1-202ENST00000594243 NPIPB5A8MRT5 1133 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 IGHV3-11P01762 117 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 HSPB1P04792 205 aaKnown RBP11.64□□□□□ -0.55
UPF1-202ENST00000594243 INPP1P49441 399 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 OR2B8PP59922 312 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 FHL3Q13643 280 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 H2BFWTQ7Z2G1 175 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 C1QL4Q86Z23 238 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 SEC22AQ96IW7 307 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 TP53RKQ96S44 253 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 SRRQ9GZT4 340 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 C5orf66Q9H5L9 145 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 PRNDQ9UKY0 176 aa11.64□□□□□ -0.55
UPF1-202ENST00000594243 TEX13DA0A0J9YY54 714 aaPredicted RBP11.63□□□□□ -0.55
UPF1-202ENST00000594243 TEX50A0A1B0GTY4 177 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 FAM223BA6NKX1 122 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 LINC01619G3V211 115 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 IGKV1-39P01597 117 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 IGKV1D-39P04432 117 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 CRYGCP07315 174 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 TRAPPC2P0DI81 140 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 TRAPPC2BP0DI82 140 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 MYOD1P15172 320 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 PSMB6P28072 239 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 DEFA6Q01524 100 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 ZNF45Q02386 682 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 TRIM16LQ309B1 348 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 HSD17B13Q7Z5P4 300 aaPredicted RBP11.63□□□□□ -0.55
UPF1-202ENST00000594243 FAM223AQ8IWN6 122 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 OR1L8Q8NGR8 309 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 OR4A16Q8NH70 328 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 QTRT1Q9BXR0 403 aaKnown RBP11.63□□□□□ -0.55
UPF1-202ENST00000594243 ALX4Q9H161 411 aaPredicted RBP11.63□□□□□ -0.55
UPF1-202ENST00000594243 RANGRFQ9HD47 186 aaPredicted RBP11.63□□□□□ -0.55
UPF1-202ENST00000594243 KCNIP3Q9Y2W7 256 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 OR51B2Q9Y5P1 312 aa11.63□□□□□ -0.55
UPF1-202ENST00000594243 VWFP04275 2813 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 TRBV9A0A0B4J1U6 114 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 A0A1B0GW64 132 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 A6NHS1 94 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 CGB1A6NKQ9 187 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 DEFA4P12838 97 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 CTRB1P17538 263 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 UCP1P25874 307 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 DHODHQ02127 395 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 BEAN1Q3B7T3 259 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 SP6Q3SY56 376 aa11.62□□□□□ -0.55
UPF1-202ENST00000594243 KPRPQ5T749 579 aaPredicted RBP11.62□□□□□ -0.55
UPF1-202ENST00000594243 TRIQKQ629K1 86 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms