RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RPL12P30050 165 aaKnown RBP10.95□□□□□ -0.66
CCDC40-209ENST00000573474 MAS1LP35410 378 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 F2RL1P55085 397 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 PAX9P55771 341 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 ZNF345Q14585 488 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 MMDQ15546 238 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 PRSS8Q16651 343 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 TMUB2Q71RG4 321 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 MMD2Q8IY49 270 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 KCNRGQ8N5I3 272 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 OR8H1Q8NGG4 311 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 OR5B3Q8NH48 314 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 DTD1Q8TEA8 209 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 AQP10Q96PS8 301 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 CIB3Q96Q77 187 aaPredicted RBP10.95□□□□□ -0.66
CCDC40-209ENST00000573474 CLCC1Q96S66 551 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 FBXL15Q9H469 300 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 ZNF430Q9H8G1 570 aaPredicted RBP10.95□□□□□ -0.66
CCDC40-209ENST00000573474 TCF19Q9Y242 345 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 WSB1Q9Y6I7 421 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 CSMD1Q96PZ7 3565 aa10.95□□□□□ -0.66
CCDC40-209ENST00000573474 RNF222A6NCQ9 220 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 TMEM50AO95807 157 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 HKR1P10072 659 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 AP2S1P53680 142 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-209ENST00000573474 PLGLAQ15195 96 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 AANATQ16613 207 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 MRGPRG-AS1Q2M3A8 158 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 LRRC75BQ2VPJ9 315 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 C9orf139Q6ZV77 190 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 PPP1R27Q86WC6 154 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 OR2C3Q8N628 320 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 OR1L8Q8NGR8 309 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 COMMD5Q9GZQ3 224 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 SLC25A31Q9H0C2 315 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 ENY2Q9NPA8 101 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 ZC4H2Q9NQZ6 224 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 TPSG1Q9NRR2 321 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 PLSCR3Q9NRY6 295 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 LYRM2Q9NU23 88 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-209ENST00000573474 PSENENQ9NZ42 101 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 C1RLQ9NZP8 487 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 BOLA1Q9Y3E2 137 aa10.94□□□□□ -0.66
CCDC40-209ENST00000573474 SOX21Q9Y651 276 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-209ENST00000573474 FAM24AA6NFZ4 105 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 MSGN1A6NI15 193 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 TSC22D2O75157 780 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 MYOD1P15172 320 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 S100A11P31949 105 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 VDAC2P45880 294 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-209ENST00000573474 CAV2P51636 162 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 PRCDQ00LT1 54 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 PJVKQ0ZLH3 352 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 C5orf64Q2M2E5 130 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 FBLN7Q53RD9 439 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 SPINK9Q5DT21 86 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 PIFOQ8TCI5 191 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 ZDHHC16Q969W1 377 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 SSX3Q99909 188 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 ARL6Q9H0F7 186 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 HIPK2Q9H2X6 1198 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 AKAP9Q99996 3911 aa10.93□□□□□ -0.66
CCDC40-209ENST00000573474 NCBP2LA6PVI3 153 aaKnown RBP10.92□□□□□ -0.66
CCDC40-209ENST00000573474 ACTL6BO94805 426 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 HOXA1P49639 335 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-209ENST00000573474 RPP30P78346 268 aaKnown RBP10.92□□□□□ -0.66
CCDC40-209ENST00000573474 KRTAP1-1Q07627 177 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 OPCMLQ14982 345 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 TMEM252Q8N6L7 170 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 HINT2Q9BX68 163 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 PLEKHA3Q9HB20 300 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 HEYLQ9NQ87 328 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-209ENST00000573474 NDUFA4L2Q9NRX3 87 aa10.92□□□□□ -0.66
CCDC40-209ENST00000573474 ABCA1O95477 2261 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 A0A1W2PN81 502 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 IGSF23A1L1A6 192 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 OPN1MWP04001 364 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 OPN1MW2P0DN77 364 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 OPN1MW3P0DN78 364 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 CHRNA7P36544 502 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 COMPP49747 757 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-209ENST00000573474 BAXQ07812 192 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 TNXAQ16473 311 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 DEFB112Q30KQ8 113 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 SPANXN5Q5MJ07 72 aa10.91□□□□□ -0.66
CCDC40-209ENST00000573474 BCL6BQ8N143 479 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-209ENST00000573474 STRAPQ9Y3F4 350 aaKnown RBP10.91□□□□□ -0.66
CCDC40-209ENST00000573474 ZANQ9Y493 2812 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 KANTRA0A1W2PQU2 76 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 INS-IGF2F8WCM5 200 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 H3BP45 60 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 FCN1O00602 326 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 TAAR5O14804 337 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 BCL2L11O43521 198 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 RPL27AP46776 148 aaKnown RBP10.9□□□□□ -0.66
CCDC40-209ENST00000573474 SULT1A1P50225 295 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 GNB1P62873 340 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 EWSR1Q01844 656 aaKnown RBP eCLIP10.9□□□□□ -0.66
CCDC40-209ENST00000573474 TMEM14EPQ6UXP3 125 aa10.9□□□□□ -0.66
CCDC40-209ENST00000573474 STX12Q86Y82 276 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 147.6 ms