RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR10G3Q8NGC4 313 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ABI3Q9P2A4 366 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 A0A096LPE4 126 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 A0A1W2PPZ6 126 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 G3V4G9 280 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TAX1BP3O14907 124 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 SYNGR2O43760 224 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 CST7O76096 145 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 HLA-DQA1P01909 254 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ANOS1P23352 680 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 GPR12P47775 334 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 PAX2Q02962 417 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 MALLQ13021 153 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 KLF5Q13887 457 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 MRPL23Q16540 153 aaKnown RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 PHLDA2Q53GA4 152 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ZNF766Q5HY98 468 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 LINC00596Q86U02 117 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 BAGE3Q86Y29 109 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 BAGE2Q86Y30 109 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 MTURNQ8N3F0 131 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 RPP25LQ8N5L8 163 aaKnown RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 NECAP1Q8NC96 275 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 OR10G9Q8NGN4 311 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 SLC25A40Q8TBP6 338 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 HES4Q9HCC6 221 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 SLC7A10Q9NS82 523 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 BEX4Q9NWD9 120 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 POLR1DQ9Y2S0 133 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 RBM7Q9Y580 266 aaKnown RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 LOC400499M0QZD8 3231 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 SHANK1Q9Y566 2161 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 C17orf105B2RV13 164 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 SHISA8B8ZZ34 492 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 ZFAND5O76080 213 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 MPZL1O95297 269 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 IGHG1P01857 330 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 EDN2P20800 178 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 LDLRAD2Q5SZI1 272 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 ATP1A1-AS1Q5TC04 95 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 FAM57BQ71RH2 274 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 MRPL21Q7Z2W9 205 aaKnown RBP4.4□□□□□ -1.7
USP28-213ENST00000544967 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.4□□□□□ -1.7
USP28-213ENST00000544967 LRP11Q86VZ4 500 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 FDCSPQ8NFU4 85 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 OR10P1Q8NGE3 313 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 OR4F5Q8NH21 305 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 MS4A6AQ9H2W1 248 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 PATZ1Q9HBE1 687 aaKnown RBP4.4□□□□□ -1.7
USP28-213ENST00000544967 IGSF10Q6WRI0 2623 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 ATMQ13315 3056 aa4.4□□□□□ -1.7
USP28-213ENST00000544967 A0A1B0GV72 72 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 MPDU1O75352 247 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 OMGP23515 440 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 SEC11AP67812 179 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 C10orf128Q5T292 105 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 UNQ5815/PRO19632Q6UWF5 114 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 C1QL2Q7Z5L3 287 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 C17orf78Q8N4C9 275 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 OR52L2PQ8NGH6 319 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 OR5A2Q8NGI9 324 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 RSG1Q9BU20 258 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 SSBP4Q9BWG4 385 aaPredicted RBP4.4□□□□□ -1.71
USP28-213ENST00000544967 CRIM1Q9NZV1 1036 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 OR51B2Q9Y5P1 312 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 RFNGQ9Y644 331 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 A0A0U1RRA0 63 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 C11orf94C9JXX5 98 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 TRAPPC2LH3BP13 241 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 RBFOX2O43251 390 aaKnown RBP eCLIP4.4□□□□□ -1.71
USP28-213ENST00000544967 CELA3BP08861 270 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 IGLC1P0CG04 106 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 FCGR2AP12318 317 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 F2RP25116 425 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 CFHR2P36980 270 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 TMEM267Q0VDI3 215 aaPredicted RBP4.4□□□□□ -1.71
USP28-213ENST00000544967 KLRB1Q12918 225 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 VAMP3Q15836 100 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 RNF151Q2KHN1 245 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 FFAR4Q5NUL3 377 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 UFSP1Q6NVU6 142 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 GTF2H5Q6ZYL4 71 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 METTL27Q8N6F8 245 aaPredicted RBP4.4□□□□□ -1.71
USP28-213ENST00000544967 OR8B3Q8NGG8 313 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 OR11L1Q8NGX0 322 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 OR8B2Q96RD0 313 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 VSIRQ9H7M9 311 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 PSENENQ9NZ42 101 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 PPP1R3CQ9UQK1 317 aa4.4□□□□□ -1.71
USP28-213ENST00000544967 CEP295Q9C0D2 2601 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 TRGV10A0A0A0MS01 117 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 A0A1W2PS18 150 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 NAPSAO96009 420 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 C3orf79P0CE67 100 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 RAB9AP51151 201 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 CX3CL1P78423 397 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 KRTAP27-1Q3LI81 207 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 RNF144BQ7Z419 303 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 HAPLN4Q86UW8 402 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms