RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	KCNIP1	Q9NZI2	227 aa		2.59	□□□□□ -1.99
YBX3-205	ENST00000536107	SMPX	Q9UHP9	88 aa		2.59	□□□□□ -1.99
YBX3-205	ENST00000536107	ZNF257	Q9Y2Q1	563 aa		2.59	□□□□□ -1.99
YBX3-205	ENST00000536107	IGHV7-4-1	A0A0J9YVY3	117 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107		A0A0J9YY99	117 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	MFSD2B	A6NFX1	497 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	OR2T8	A6NH00	312 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	HMX3	A6NHT5	357 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	MFNG	O00587	321 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	CHEK1	O14757	476 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ZNF254	O75437	659 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	RPP14	O95059	124 aa	Known RBP	2.58	□□□□□ -2
YBX3-205	ENST00000536107	MAS1	P04201	325 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	SHBG	P04278	402 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ATP5G1	P05496	136 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ZNF688	P0C7X2	276 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ALOX5AP	P20292	161 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	FGF9	P31371	208 aa	Predicted RBP	2.58	□□□□□ -2
YBX3-205	ENST00000536107	ATP5G3	P48201	142 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	FXYD7	P58549	80 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ACTR3	P61158	418 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	VAMP2	P63027	116 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	PAX5	Q02548	391 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	IL13RA2	Q14627	380 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	PIGY	Q3MUY2	71 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	RPL13AP3	Q6NVV1	102 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	FAM71F2	Q6NXP2	309 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	WDR93	Q6P2C0	686 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ERICH5	Q6P6B1	374 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	TRAT1	Q6PIZ9	186 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	DEGS2	Q6QHC5	323 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	C16orf54	Q6UWD8	224 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	TPRA1	Q86W33	373 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	PDPN	Q86YL7	162 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	FUNDC1	Q8IVP5	155 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ZNF679	Q8IYX0	411 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	SAXO1	Q8IYX7	474 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	CBR4	Q8N4T8	237 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	FAM24B	Q8N5W8	94 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	GNPDA2	Q8TDQ7	276 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	PP6455	Q8WZ26	134 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	LGALS12	Q96DT0	336 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	HARBI1	Q96MB7	349 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	OR52B2	Q96RD2	323 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	SH3GL1	Q99961	368 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	PAIP2	Q9BPZ3	127 aa	Known RBP	2.58	□□□□□ -2
YBX3-205	ENST00000536107	TSSK6	Q9BXA6	273 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	NMNAT2	Q9BZQ4	307 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ZNF436	Q9C0F3	470 aa	Predicted RBP	2.58	□□□□□ -2
YBX3-205	ENST00000536107	ZNF430	Q9H8G1	570 aa	Predicted RBP	2.58	□□□□□ -2
YBX3-205	ENST00000536107	TAF9B	Q9HBM6	251 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	JPT1	Q9UK76	154 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ST3GAL6	Q9Y274	331 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	GOLT1B	Q9Y3E0	138 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	ENPP4	Q9Y6X5	453 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107		R4GMQ9	66 aa		2.58	□□□□□ -2
YBX3-205	ENST00000536107	TRAV26-1	A0A087WT03	109 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	IGHV3-66	A0A0C4DH42	116 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	IGKV1-9	A0A0C4DH69	117 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	C15orf62	A8K5M9	175 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	ZNF705F	A8MVS1	300 aa	Predicted RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107		K7EMT4	169 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	NDUFA4	O00483	81 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	ST8SIA3	O43173	380 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	SNX3	O60493	162 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	YPEL1	O60688	119 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	DIRAS1	O95057	198 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	NXPH4	O95158	308 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	ISG15	P05161	165 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	CD5	P06127	495 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	FCER2	P06734	321 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	MRPL3	P09001	348 aa	Known RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	ZNF705D	P0CH99	300 aa	Predicted RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	ZNF705B	P0CI00	300 aa	Predicted RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	HIST1H1B	P16401	226 aa	Known RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	RCC1	P18754	421 aa	Predicted RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	AMT	P48728	403 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	RSU1	Q15404	277 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	PRSS8	Q16651	343 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	RRN3P1	Q2M238	152 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	VMA21	Q3ZAQ7	101 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	LINC01620	Q4KN68	170 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	DMKN	Q6E0U4	476 aa	Predicted RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	ZNF705A	Q6ZN79	300 aa	Predicted RBP	2.57	□□□□□ -2
YBX3-205	ENST00000536107	IDO2	Q6ZQW0	420 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	PLEKHG7	Q6ZR37	379 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	ZNF554	Q86TJ5	538 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	UBAC2	Q8NBM4	344 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	DUSP18	Q8NEJ0	188 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	STXBP6	Q8NFX7	210 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	OR2T33	Q8NG76	320 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	OR4C16	Q8NGL9	310 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	OR10K1	Q8NGX5	313 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	IL1F10	Q8WWZ1	152 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	ASB17	Q8WXJ9	295 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	MUL1	Q969V5	352 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	SPSB1	Q96BD6	273 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	FGGY	Q96C11	551 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	GALM	Q96C23	342 aa		2.57	□□□□□ -2
YBX3-205	ENST00000536107	ABHD14B	Q96IU4	210 aa		2.57	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms