RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 MAS1LP35410 378 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 ECSCRQ19T08 205 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 KRTAP21-3Q3LHN1 58 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 ZNF580Q9UK33 172 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 FGF2P09038 288 aa23.3■■□□□ 1.32
LIMCH1-211ENST00000509638 EGR2P11161 476 aaPredicted RBP23.3■■□□□ 1.32
LIMCH1-211ENST00000509638 SGMS2Q8NHU3 365 aa23.3■■□□□ 1.32
LIMCH1-211ENST00000509638 CHPT1Q8WUD6 406 aa23.3■■□□□ 1.32
LIMCH1-211ENST00000509638 WFDC12Q8WWY7 111 aa23.3■■□□□ 1.32
LIMCH1-211ENST00000509638 WSB1Q9Y6I7 421 aa23.3■■□□□ 1.32
LIMCH1-211ENST00000509638 A0A0B4J2A0 478 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 C15orf61A6NNL5 157 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 DUS4LO95620 317 aaKnown RBP23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 OPN1MWP04001 364 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 OPN1MW2P0DN77 364 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 OPN1MW3P0DN78 364 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 VDAC1P21796 283 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 LYZL2Q7Z4W2 148 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 LRTM2Q8N967 370 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 SEC22CQ9BRL7 303 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 SHPKQ9UHJ6 478 aa23.29■■□□□ 1.32
LIMCH1-211ENST00000509638 G3V318 75 aa23.28■■□□□ 1.32
LIMCH1-211ENST00000509638 RPL27AP46776 148 aaKnown RBP23.28■■□□□ 1.32
LIMCH1-211ENST00000509638 CRIP2P52943 208 aaPredicted RBP23.28■■□□□ 1.32
LIMCH1-211ENST00000509638 FAM219AQ8IW50 185 aa23.28■■□□□ 1.32
LIMCH1-211ENST00000509638 COMMD5Q9GZQ3 224 aa23.28■■□□□ 1.32
LIMCH1-211ENST00000509638 PRNDQ9UKY0 176 aa23.28■■□□□ 1.32
LIMCH1-211ENST00000509638 TRAV41A0A0B4J266 112 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 LFNGQ8NES3 379 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 OR4A16Q8NH70 328 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 COQ8AQ8NI60 647 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 PHB2Q99623 299 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 MARVELD1Q9BSK0 173 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 TMEM14BQ9NUH8 114 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 PIGBOS1A0A0B4J2F0 54 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 PSMB11A5LHX3 300 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 DBX1A6NMT0 343 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 INMT-MINDY4F8WBC2 141 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 RBMXL2O75526 392 aaKnown RBP23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 APELAP0DMC3 54 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 C10orf99Q6UWK7 81 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 CENPVQ7Z7K6 275 aaPredicted RBP23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 ZNF329Q86UD4 541 aa23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 LSM10Q969L4 123 aaKnown RBP23.27■■□□□ 1.32
LIMCH1-211ENST00000509638 DUXBA0A1W2PPF3 345 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 MSGN1A6NI15 193 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 RGS21Q2M5E4 152 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 NMSQ5H8A3 153 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 WIPF2Q8TF74 440 aaPredicted RBP23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 FYTTD1Q96QD9 318 aaKnown RBP23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 SPIN2AQ99865 258 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 SPIN2BQ9BPZ2 258 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 GON7Q9BXV9 100 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 FOXA2Q9Y261 457 aaPredicted RBP23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 OR51B2Q9Y5P1 312 aa23.26■■□□□ 1.31
LIMCH1-211ENST00000509638 A0A0B4J293 547 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 A0A1B0GW64 132 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 E7EUB6 86 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 CFHR3Q02985 330 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 C19orf54Q5BKX5 351 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 UNQ5815/PRO19632Q6UWF5 114 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 ZNF431Q8TF32 576 aaPredicted RBP23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 MITD1Q8WV92 249 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 CACNG5Q9UF02 275 aa23.25■■□□□ 1.31
LIMCH1-211ENST00000509638 SLC35B1P78383 322 aa23.24■■□□□ 1.31
LIMCH1-211ENST00000509638 TMEM267Q0VDI3 215 aaPredicted RBP23.24■■□□□ 1.31
LIMCH1-211ENST00000509638 C12orf54Q6X4T0 127 aa23.24■■□□□ 1.31
LIMCH1-211ENST00000509638 Q6ZRM9 215 aa23.24■■□□□ 1.31
LIMCH1-211ENST00000509638 GPR146Q96CH1 333 aa23.24■■□□□ 1.31
LIMCH1-211ENST00000509638 CGB1A6NKQ9 187 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 TEX22C9J3V5 150 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 AKIRIN2Q53H80 203 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 ASPHD1Q5U4P2 390 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 QTRT1Q9BXR0 403 aaKnown RBP23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 FKBP11Q9NYL4 201 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 ANK2Q01484 3957 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 IL5P05113 134 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 HOXB5P09067 269 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 KRTAP10-3P60369 221 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 OR5AU1Q8NGC0 362 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 OR1L8Q8NGR8 309 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 OR5B3Q8NH48 314 aa23.23■■□□□ 1.31
LIMCH1-211ENST00000509638 TEX50A0A1B0GTY4 177 aa23.22■■□□□ 1.31
LIMCH1-211ENST00000509638 A0A1W2PN81 502 aa23.22■■□□□ 1.31
LIMCH1-211ENST00000509638 HMX3A6NHT5 357 aa23.22■■□□□ 1.31
LIMCH1-211ENST00000509638 CHRNA7P36544 502 aa23.22■■□□□ 1.31
LIMCH1-211ENST00000509638 HINT2Q9BX68 163 aa23.22■■□□□ 1.31
LIMCH1-211ENST00000509638 PRAF2O60831 178 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 ADAP1O75689 374 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 PPIFP30405 207 aaKnown RBP23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 ZNF429Q86V71 674 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 C11orf44Q8N8P7 122 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 MINDY2Q8NBR6 621 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 ZNF257Q9Y2Q1 563 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 TMED3Q9Y3Q3 217 aa23.21■■□□□ 1.31
LIMCH1-211ENST00000509638 ST8SIA3O43173 380 aa23.2■■□□□ 1.3
LIMCH1-211ENST00000509638 DHFRP00374 187 aa23.2■■□□□ 1.3
LIMCH1-211ENST00000509638 SULT1A3P0DMM9 295 aa23.2■■□□□ 1.3
LIMCH1-211ENST00000509638 SULT1A4P0DMN0 295 aa23.2■■□□□ 1.3
LIMCH1-211ENST00000509638 SRSF4Q08170 494 aaKnown RBP23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms