RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DAZAP1Q96EP5 407 aaKnown RBP9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM204Q9BSN7 226 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TBL2Q9Y4P3 447 aaKnown RBP9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 A0A1B0GV72 72 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM250H0YL14 139 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FCGR3BO75015 233 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PSG2P11465 335 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SSTR5P35346 364 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TNFAIP6P98066 277 aaPredicted RBP9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PET117Q6UWS5 81 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 C12orf54Q6X4T0 127 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LYG1Q8N1E2 194 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR5A2Q8NGI9 324 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ZNF292O60281 2723 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 A0A1B0GW64 132 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 GPR12P47775 334 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SMIM21Q3B7S5 101 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TCF23Q7RTU1 214 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 H2BFWTQ7Z2G1 175 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ITLN1Q8WWA0 313 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 RND1Q92730 232 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 POM121L2Q96KW2 1035 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM191AQ9H0A3 160 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 HSPB7Q9UBY9 170 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 COL12A1Q99715 3063 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 USP9XQ93008 2570 aaPredicted RBP9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PRR33A8MZF0 331 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ACTL6BO94805 426 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 NUDT3O95989 172 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 IL3RAP26951 378 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CAMPP49913 170 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LINC00205P59089 165 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PLGLAQ15195 96 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FAM162BQ5T6X4 162 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LINC01560Q8TB33 94 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 RNASE8Q8TDE3 154 aaKnown RBP9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM222Q9H0R3 208 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 DLL3Q9NYJ7 618 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MPC1Q9Y5U8 109 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 J3QT63 122 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PDE6DO43924 150 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LYL1P12980 280 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CRYGSP22914 178 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LY6DQ14210 128 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PRAMEF5Q5TYX0 476 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CCL13Q99616 98 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CHRDL1Q9BU40 450 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 UQCRFS1P47985 274 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR51G1Q8NGK1 321 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ORAOV1Q8WV07 137 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LIN7CQ9NUP9 197 aaKnown RBP9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LAMA5O15230 3695 aa9.06□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR5B21A6NL26 309 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SRSF10O75494 262 aaKnown RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CD55P08174 381 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 GNG4P50150 75 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ACSF3Q4G176 576 aaPredicted RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 VKORC1L1Q8N0U8 176 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR4C12Q96R67 309 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM147Q9BVK8 224 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 REPIN1Q9BWE0 567 aaKnown RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 WIPF3A6NGB9 483 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CEACAM8P31997 349 aaPredicted RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 DNM1P46Q6ZS02 220 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MRPL52Q86TS9 123 aaKnown RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR8I2Q8N0Y5 310 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ST6GALNAC6Q969X2 333 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 NUDT16L1Q9BRJ7 211 aaKnown RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 KCNIP2Q9NS61 270 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ATG2AQ2TAZ0 1938 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 NKX6-3A6NJ46 265 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 M0QZ24 198 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CCL21O00585 134 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OTX1P32242 354 aaPredicted RBP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 G6PCP35575 357 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 RND2P52198 227 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 Q6ZT83 130 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MDS2Q8NDY4 140 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 GNG7O60262 68 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FGF12P61328 243 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 GNB2P62879 340 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FAM166AQ6J272 317 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ZNF818PQ6ZRF7 136 aa9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TAF15Q92804 592 aaKnown RBP eCLIP9.05□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SMPD2O60906 423 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 KCNMB1Q16558 191 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SAMD13Q5VXD3 122 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SLC25A34Q6PIV7 304 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM108Q6UXF1 575 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 NRN1Q9NPD7 142 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 AKAP13Q12802 2813 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 IGKV1D-13A0A0B4J2D9 117 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 A0A1B0GUS0 222 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TMEM30CPA0ZSE6 113 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LYNX1G3V0Z9 82 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 RPL36A-HNRNPH2H7BZ11 118 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 IGKV1-13P0DP09 117 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LYNX1P0DP58 116 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SRIP30626 198 aa9.04□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ADMP35318 185 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms