RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TIMM23BQ5SRD1 257 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 TCF23Q7RTU1 214 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 ZNF383Q8NA42 475 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 CIB3Q96Q77 187 aaPredicted RBP11.03□□□□□ -0.64
VPS54-203ENST00000409558 CACNA1AO00555 2505 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 H3BTX0 84 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 IGLV1-44P01699 117 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 TET2Q6N021 2002 aaPredicted RBP11.03□□□□□ -0.64
VPS54-203ENST00000409558 GGACTQ9BVM4 153 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 SLC35D1Q9NTN3 355 aa11.03□□□□□ -0.64
VPS54-203ENST00000409558 SCO2A0A1W2PP80 73 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 PPP5D1E7EU14 171 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 MKRN2OSH3BPM6 223 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 TNFSF4P23510 183 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 CD82P27701 267 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 TCL1AP56279 114 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 LYPD2Q6UXB3 125 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 TREML4Q6UXN2 200 aa11.02□□□□□ -0.64
VPS54-203ENST00000409558 DYSFO75923 2080 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 ZNF320A2RRD8 509 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 SLC17A3O00476 420 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 UBE2CO00762 179 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 CD33P20138 364 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 LOXL3P58215 753 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 GNB1P62873 340 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 GUSBP1Q15486 140 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 PSMG3Q9BT73 122 aaPredicted RBP11.02□□□□□ -0.65
VPS54-203ENST00000409558 SAP30LQ9HAJ7 183 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 A0A0G2JNJ9 132 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 J3QR06 171 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 NPPCP23582 126 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 NPY1RP25929 384 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 PYY3Q5JQD4 70 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 OR10X1Q8NGY0 326 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 PFDN5Q99471 154 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 Q9UFV3 132 aa11.02□□□□□ -0.65
VPS54-203ENST00000409558 SRRM4A7MD48 611 aaKnown RBP11.01□□□□□ -0.65
VPS54-203ENST00000409558 MBNL2Q5VZF2 373 aaKnown RBP11.01□□□□□ -0.65
VPS54-203ENST00000409558 LINC01560Q8TB33 94 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 NAT8Q9UHE5 227 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 BSNQ9UPA5 3926 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 IFITM10A6NMD0 228 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 OR5I1Q13606 314 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 C17orf58Q2M2W7 97 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 STUMQ69YW2 141 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 ZBTB34Q8NCN2 500 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 MBD3L1Q8WWY6 194 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 NEIL1Q96FI4 390 aaPredicted RBP11.01□□□□□ -0.65
VPS54-203ENST00000409558 MGST2Q99735 147 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 SLC25A10Q9UBX3 287 aaPredicted RBP11.01□□□□□ -0.65
VPS54-203ENST00000409558 OR51B2Q9Y5P1 312 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 J3QW42 95 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 TCF15Q12870 199 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 DOLPP1Q86YN1 238 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 OR4S2Q8NH73 311 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 EGLN1Q9GZT9 426 aa11.01□□□□□ -0.65
VPS54-203ENST00000409558 MBD3L4A6NDZ8 208 aaPredicted RBP11□□□□□ -0.65
VPS54-203ENST00000409558 MBD3L3A6NE82 208 aaPredicted RBP11□□□□□ -0.65
VPS54-203ENST00000409558 MBD3L5A6NJ08 208 aaPredicted RBP11□□□□□ -0.65
VPS54-203ENST00000409558 PMS2P5A8MQ11 134 aa11□□□□□ -0.65
VPS54-203ENST00000409558 A8MXE2 369 aa11□□□□□ -0.65
VPS54-203ENST00000409558 SSTP61278 116 aa11□□□□□ -0.65
VPS54-203ENST00000409558 HCP5Q6MZN7 132 aa11□□□□□ -0.65
VPS54-203ENST00000409558 TMEM108Q6UXF1 575 aa11□□□□□ -0.65
VPS54-203ENST00000409558 C1QL4Q86Z23 238 aa11□□□□□ -0.65
VPS54-203ENST00000409558 SLC24A4Q8NFF2 622 aa11□□□□□ -0.65
VPS54-203ENST00000409558 MBD3L2Q8NHZ7 208 aaPredicted RBP11□□□□□ -0.65
VPS54-203ENST00000409558 METTL1Q9UBP6 276 aaKnown RBP11□□□□□ -0.65
VPS54-203ENST00000409558 DPRXA6NFQ7 191 aa11□□□□□ -0.65
VPS54-203ENST00000409558 C16orf97H3BN30 126 aa11□□□□□ -0.65
VPS54-203ENST00000409558 RELBQ01201 579 aa11□□□□□ -0.65
VPS54-203ENST00000409558 SERTAD4Q9NUC0 356 aa11□□□□□ -0.65
VPS54-203ENST00000409558 KBTBD11-OT1A0A1B0GTJ5 212 aa11□□□□□ -0.65
VPS54-203ENST00000409558 PHOX2AO14813 284 aa11□□□□□ -0.65
VPS54-203ENST00000409558 GFRA3O60609 400 aa11□□□□□ -0.65
VPS54-203ENST00000409558 FOLR2P14207 255 aa11□□□□□ -0.65
VPS54-203ENST00000409558 COX7A1P24310 79 aa11□□□□□ -0.65
VPS54-203ENST00000409558 RAB4BP61018 213 aa11□□□□□ -0.65
VPS54-203ENST00000409558 MZT1Q08AG7 82 aa11□□□□□ -0.65
VPS54-203ENST00000409558 C1orf162Q8NEQ5 155 aaPredicted RBP11□□□□□ -0.65
VPS54-203ENST00000409558 HARBI1Q96MB7 349 aa11□□□□□ -0.65
VPS54-203ENST00000409558 UHRF2Q96PU4 802 aa11□□□□□ -0.65
VPS54-203ENST00000409558 IMMP2LQ96T52 175 aa11□□□□□ -0.65
VPS54-203ENST00000409558 MRPL20Q9BYC9 149 aaKnown RBP11□□□□□ -0.65
VPS54-203ENST00000409558 CCKARP32238 428 aa11□□□□□ -0.65
VPS54-203ENST00000409558 PSG5Q15238 335 aa11□□□□□ -0.65
VPS54-203ENST00000409558 OR9G1Q8NH87 305 aa11□□□□□ -0.65
VPS54-203ENST00000409558 OR2T6Q8NHC8 308 aa11□□□□□ -0.65
VPS54-203ENST00000409558 PLEKHA3Q9HB20 300 aa11□□□□□ -0.65
VPS54-203ENST00000409558 JPT1Q9UK76 154 aa11□□□□□ -0.65
VPS54-203ENST00000409558 GRIFINA4D1Z8 144 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 CXorf65A6NEN9 183 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 IGHV2-5P01817 119 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 MGST1P10620 155 aaKnown RBP10.99□□□□□ -0.65
VPS54-203ENST00000409558 SPCS3P61009 180 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 ARSJQ5FYB0 599 aaPredicted RBP10.99□□□□□ -0.65
VPS54-203ENST00000409558 MIR17HGQ75NE6 70 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 KIR3DL3Q8N743 410 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 STPG3Q8N7X2 389 aa10.99□□□□□ -0.65
VPS54-203ENST00000409558 TMEM170AQ8WVE7 144 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms